WormBase Tree Display for Variation: WBVar00206822
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| WBVar00206822 | Name | Public_name | WBVar00206822 | ||
|---|---|---|---|---|---|
| Other_name | snp_T27C4[2] | ||||
| haw74098 | |||||
| haw164262 | |||||
| cewivar00229539 | |||||
| T27C4.4d.1:c.*1040C>G | |||||
| T27C4.4b.2:c.*150C>G | |||||
| T27C4.4b.1:c.*150C>G | |||||
| T27C4.4a.1:c.*5C>G | |||||
| HGVSg | CHROMOSOME_V:g.3712508C>G | ||||
| Sequence_details | SMap | S_parent | Sequence | T27C4 | |
| Flanking_sequences | tcccgcaccactgaatcatgatctt | ttcactaatgtattctttcttttat | |||
| Mapping_target | T27C4 | ||||
| Type_of_mutation | Substitution | C | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| WBStrain00031279 | From_analysis | WGS_Andersen | |||
| WBStrain00031284 | From_analysis | WGS_Andersen | |||
| Laboratory | RW | ||||
| QX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| WBPerson1730 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01458985 | |||
| WBVar00246491 | |||||
| WBVar00584127 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003025 | |||
| Transcript | T27C4.4d.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27C4.4d.1:c.*1040C>G | ||||
| cDNA_position | 3677 | ||||
| Exon_number | 9/9 | ||||
| T27C4.4b.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27C4.4b.2:c.*150C>G | ||||
| cDNA_position | 2787 | ||||
| Exon_number | 9/9 | ||||
| T27C4.4a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27C4.4a.1:c.*5C>G | ||||
| cDNA_position | 3091 | ||||
| Exon_number | 10/10 | ||||
| T27C4.4b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27C4.4b.1:c.*150C>G | ||||
| cDNA_position | 2780 | ||||
| Exon_number | 9/9 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00040707 | |||||
| WBPaper00004703 | |||||
| Remark | [20081124 db] this Variation was previously named hw74098 | ||||
| Method | WGS_Hawaiian_Waterston |
