WormBase Tree Display for Variation: WBVar00204966
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WBVar00204966 | Evidence | Paper_evidence | WBPaper00005369 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00204966 | |||
Other_name (12) | |||||
HGVSg | CHROMOSOME_V:g.2796235T>C | ||||
Sequence_details | SMap | S_parent | Sequence | F54E2 | |
Flanking_sequences | caaacaaagaccgctcctttgaata | ctatttacacacacttaaccctcct | |||
Mapping_target | F54E2 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
SNP_Swan | |||||
History | Acquires_merge | WBVar00271553 | |||
Status | Live | ||||
Affects | Gene | WBGene00004130 | |||
Transcript | F54E2.3j.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F54E2.3j.1:c.2404-142A>G | ||||
Intron_number | 5/19 | ||||
F54E2.3d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54E2.3d.1:c.2404-142A>G | ||||
Intron_number | 5/17 | ||||
F54E2.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54E2.3a.1:c.2404-142A>G | ||||
Intron_number | 5/19 | ||||
F54E2.3i.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54E2.3i.1:c.2404-142A>G | ||||
Intron_number | 5/20 | ||||
F54E2.3e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54E2.3e.1:c.4321-142A>G | ||||
Intron_number | 13/27 | ||||
F54E2.3f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54E2.3f.1:c.4321-142A>G | ||||
Intron_number | 13/25 | ||||
F54E2.3h.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54E2.3h.1:c.4321-142A>G | ||||
Intron_number | 13/27 | ||||
F54E2.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54E2.3c.1:c.2404-142A>G | ||||
Intron_number | 5/17 | ||||
F54E2.3g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54E2.3g.1:c.4321-142A>G | ||||
Intron_number | 13/28 | ||||
Reference | WBPaper00005369 | ||||
Remark | [20081124 db] this Variation was previously named hw72242 | ||||
Method | WGS_Hawaiian_Waterston |