WormBase Tree Display for Variation: WBVar00197283
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| WBVar00197283 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00197283 | |||
| Other_name | haw64559 | ||||
| haw157593 | |||||
| cewivar00215207 | |||||
| Y73F8A.25b.1:c.216-38C>T | |||||
| Y73F8A.25a.2:c.1167-38C>T | |||||
| Y73F8A.25d.1:c.1167-38C>T | |||||
| Y73F8A.25a.1:c.1167-38C>T | |||||
| HGVSg | CHROMOSOME_IV:g.15466149G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y73F8A | |
| Flanking_sequences | gcgttttttttacattttttggcgg | aaatctgatttgaagaggggtaagg | |||
| Mapping_target | Y73F8A | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00577458 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00013530 | |||
| WBGene00305889 | |||||
| Transcript | Y73F8A.25b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y73F8A.25b.1:c.216-38C>T | ||||
| Intron_number | 3/6 | ||||
| Y73F8A.25a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y73F8A.25a.2:c.1167-38C>T | ||||
| Intron_number | 6/10 | ||||
| Y73F8A.1177 | |||||
| Y73F8A.25a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y73F8A.25a.1:c.1167-38C>T | ||||
| Intron_number | 6/11 | ||||
| Y73F8A.25d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y73F8A.25d.1:c.1167-38C>T | ||||
| Intron_number | 6/10 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw64559 | ||||
| Method | WGS_Hawaiian_Waterston |
