WormBase Tree Display for Variation: WBVar00192015

WBVar00192015 Name: Public_name: WBVar00192015
    Other_name (12)
    HGVSg: CHROMOSOME_IV:g.11341455T>A
  Sequence_details: SMap: S_parent: Sequence: F54E12
    Flanking_sequences: gaaaatgatacaattagacagcatt gatttccagaatccgactgtcgaat
    Mapping_target: F54E12
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: Million_mutation_project_reanalysis
          WGS_Hawaiian_Waterston
    Laboratory: RW
    Person: WBPerson1562
    Analysis: WGS_Hawaiian_Waterston
      Million_mutation_project_reanalysis
    Status: Live
  Affects: Gene: WBGene00001931
      WBGene00002223
    Transcript: T01G1.1d.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: T01G1.1d.1:c.1002A>T
        HGVSp: CE42645:p.Ser334=
        cDNA_position: 1002
        CDS_position: 1002
        Protein_position: 334
        Exon_number: 4/4
        Codon_change: tcA/tcT
        Amino_acid_change: S
      F54E12.5b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F54E12.5b.1:c.414-10T>A
        Intron_number: 3/4
      T01G1.1e.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: T01G1.1e.1:c.4374A>T
        HGVSp: CE53084:p.Ser1458=
        cDNA_position: 4447
        CDS_position: 4374
        Protein_position: 1458
        Exon_number: 20/21
        Codon_change: tcA/tcT
        Amino_acid_change: S
      T01G1.1a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: T01G1.1a.1:c.4806A>T
        HGVSp: CE37926:p.Ser1602=
        cDNA_position: 4873
        CDS_position: 4806
        Protein_position: 1602
        Exon_number: 22/23
        Codon_change: tcA/tcT
        Amino_acid_change: S
      T01G1.1c.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: T01G1.1c.1:c.4731A>T
        HGVSp: CE40999:p.Ser1577=
        cDNA_position: 4798
        CDS_position: 4731
        Protein_position: 1577
        Exon_number: 22/23
        Codon_change: tcA/tcT
        Amino_acid_change: S
      F54E12.5c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F54E12.5c.1:c.381-10T>A
        Intron_number: 2/3
  Remark: [20081124 db] this Variation was previously named hw59291
  Method: WGS_Hawaiian_Waterston