WormBase Tree Display for Variation: WBVar00190805
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| WBVar00190805 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00190805 | |||
| Other_name | snp_F33D4[1] | ||||
| haw58081 | |||||
| cewivar00207685 | |||||
| F33D4.2f.1:c.5852-121C>T | |||||
| F33D4.2a.1:c.5990-121C>T | |||||
| F33D4.2h.1:c.5915-121C>T | |||||
| F33D4.2e.1:c.5911+154C>T | |||||
| F33D4.2d.1:c.5822-121C>T | |||||
| HGVSg | CHROMOSOME_IV:g.7692816C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F33D4 | |
| Flanking_sequences | aaattaagattaatcagtttccact | ctacgtaatttcgtgtgcaattgag | |||
| Mapping_target | F33D4 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar00244538 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00002173 | |||
| Transcript | F33D4.2d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F33D4.2d.1:c.5822-121C>T | ||||
| Intron_number | 23/31 | ||||
| F33D4.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F33D4.2a.1:c.5990-121C>T | ||||
| Intron_number | 24/33 | ||||
| F33D4.2f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F33D4.2f.1:c.5852-121C>T | ||||
| Intron_number | 24/33 | ||||
| F33D4.2h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F33D4.2h.1:c.5915-121C>T | ||||
| Intron_number | 24/33 | ||||
| F33D4.2e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F33D4.2e.1:c.5911+154C>T | ||||
| Intron_number | 26/34 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | [20081124 db] this Variation was previously named hw58081 | ||||
| Method | WGS_Hawaiian_Waterston |
