WormBase Tree Display for Variation: WBVar00190710
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WBVar00190710 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00190710 | |||
Other_name | snp_R05G6[9] | ||||
haw57986 | |||||
cewivar00207566 | |||||
R05G6.10e.1:c.48+1684C>A | |||||
R05G6.10d.1:c.177+1684C>A | |||||
R05G6.10c.1:c.222+1684C>A | |||||
HGVSg | CHROMOSOME_IV:g.7526906G>T | ||||
Sequence_details | SMap | S_parent | Sequence | R05G6 | |
Flanking_sequences | ctgcacctttaaacgcactttctca | aagaacaatgttcaccgtataagga | |||
Mapping_target | R05G6 | ||||
Type_of_mutation | Substitution | G | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
SNP_Wicks | |||||
History | Acquires_merge | WBVar00245813 | |||
Status | Live | ||||
Affects | Gene | WBGene00019902 | |||
Transcript | R05G6.10e.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | R05G6.10e.1:c.48+1684C>A | ||||
Intron_number | 1/9 | ||||
R05G6.10c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R05G6.10c.1:c.222+1684C>A | ||||
Intron_number | 3/12 | ||||
R05G6.10d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R05G6.10d.1:c.177+1684C>A | ||||
Intron_number | 2/10 | ||||
Reference | WBPaper00004703 | ||||
Remark | [20081124 db] this Variation was previously named hw57986 | ||||
Method | WGS_Hawaiian_Waterston |