WormBase Tree Display for Variation: WBVar00190409
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| WBVar00190409 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00190409 | |||
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_IV:g.7202221C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | R13A1 | |
| Flanking_sequences | tcaaacatttatatttttagggttg | catcgaaattgtttccaattgaaag | |||
| Mapping_target | R13A1 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00573292 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00006748 | |||
| Transcript | R13A1.4d.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | R13A1.4d.1:c.1542C>T | ||||
| HGVSp | CE04840:p.Cys514= | ||||
| cDNA_position | 1542 | ||||
| CDS_position | 1542 | ||||
| Protein_position | 514 | ||||
| Exon_number | 14/18 | ||||
| Codon_change | tgC/tgT | ||||
| Amino_acid_change | C | ||||
| R13A1.4c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | R13A1.4c.1:c.1665C>T | ||||
| HGVSp | CE49123:p.Cys555= | ||||
| cDNA_position | 1665 | ||||
| CDS_position | 1665 | ||||
| Protein_position | 555 | ||||
| Exon_number | 15/19 | ||||
| Codon_change | tgC/tgT | ||||
| Amino_acid_change | C | ||||
| R13A1.4a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | R13A1.4a.1:c.1662C>T | ||||
| HGVSp | CE26381:p.Cys554= | ||||
| cDNA_position | 1662 | ||||
| CDS_position | 1662 | ||||
| Protein_position | 554 | ||||
| Exon_number | 16/21 | ||||
| Codon_change | tgC/tgT | ||||
| Amino_acid_change | C | ||||
| R13A1.4b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | R13A1.4b.1:c.1659C>T | ||||
| HGVSp | CE48967:p.Cys553= | ||||
| cDNA_position | 1659 | ||||
| CDS_position | 1659 | ||||
| Protein_position | 553 | ||||
| Exon_number | 16/20 | ||||
| Codon_change | tgC/tgT | ||||
| Amino_acid_change | C | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw57685 | ||||
| Method | WGS_Hawaiian_Waterston |
