WormBase Tree Display for Variation: WBVar00190246
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| WBVar00190246 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00190246 | |||
| Other_name | haw57522 | ||||
| haw153324 | |||||
| cewivar00040353 | |||||
| CE37201:p.Cys245= | |||||
| C17H12.13b.1:c.570C>T | |||||
| C17H12.13a.1:c.735C>T | |||||
| CE19361:p.Cys190= | |||||
| HGVSg | CHROMOSOME_IV:g.6778881C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C17H12 | |
| Flanking_sequences | gacataaattgatgaagacttattg | ccaactgatgtaagaattcgaacag | |||
| Mapping_target | C17H12 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | |||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00573189 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00015938 | |||
| Transcript | C17H12.13b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C17H12.13b.1:c.570C>T | ||||
| HGVSp | CE19361:p.Cys190= | ||||
| cDNA_position | 572 | ||||
| CDS_position | 570 | ||||
| Protein_position | 190 | ||||
| Exon_number | 5/7 | ||||
| Codon_change | tgC/tgT | ||||
| Amino_acid_change | C | ||||
| C17H12.13a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C17H12.13a.1:c.735C>T | ||||
| HGVSp | CE37201:p.Cys245= | ||||
| cDNA_position | 735 | ||||
| CDS_position | 735 | ||||
| Protein_position | 245 | ||||
| Exon_number | 6/8 | ||||
| Codon_change | tgC/tgT | ||||
| Amino_acid_change | C | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw57522 | ||||
| Method | WGS_Hawaiian_Waterston |
