WormBase Tree Display for Variation: WBVar00186995
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| WBVar00186995 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00186995 | |||
| Other_name | haw54271 | ||||
| haw151153 | |||||
| cewivar00203988 | |||||
| T26C12.3a.1:c.540C>T | |||||
| CE48905:p.Gly73= | |||||
| CE49036:p.Gly180= | |||||
| T26C12.3b.1:c.219C>T | |||||
| HGVSg | CHROMOSOME_IV:g.3270089G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | T26C12 | |
| Flanking_sequences | ccgcgattctgcagtcttggattgg | ccatcatcccatttcctagatccac | |||
| Mapping_target | T26C12 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00571018 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00020833 | |||
| Transcript | T26C12.3b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | T26C12.3b.1:c.219C>T | ||||
| HGVSp | CE48905:p.Gly73= | ||||
| cDNA_position | 219 | ||||
| CDS_position | 219 | ||||
| Protein_position | 73 | ||||
| Exon_number | 1/2 | ||||
| Codon_change | ggC/ggT | ||||
| Amino_acid_change | G | ||||
| T26C12.3a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T26C12.3a.1:c.540C>T | ||||
| HGVSp | CE49036:p.Gly180= | ||||
| cDNA_position | 541 | ||||
| CDS_position | 540 | ||||
| Protein_position | 180 | ||||
| Exon_number | 3/5 | ||||
| Codon_change | ggC/ggT | ||||
| Amino_acid_change | G | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw54271 | ||||
| Method | WGS_Hawaiian_Waterston |
