WormBase Tree Display for Variation: WBVar00183181
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| WBVar00183181 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00183181 | |||
| Other_name | haw50457 | ||||
| haw148440 | |||||
| cewivar00030537 | |||||
| Y55F3AL.1f.1:c.3445-62A>G | |||||
| Y55F3AL.1c.1:c.5191-62A>G | |||||
| Y55F3AL.1a.1:c.5725-62A>G | |||||
| Y55F3AL.1d.1:c.5158-62A>G | |||||
| Y55F3AL.1e.1:c.3412-62A>G | |||||
| Y55F3AL.1b.1:c.5758-62A>G | |||||
| HGVSg | CHROMOSOME_IV:g.983534A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55F3AM | |
| Flanking_sequences | aaaaccaattaccgcctaaattttt | aaattttatttaaaaaaataaaaaa | |||
| Mapping_target | Y55F3AM | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | |||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022883 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022887 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00568305 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00004047 | |||
| Transcript | Y55F3AL.1e.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55F3AL.1e.1:c.3412-62A>G | ||||
| Intron_number | 11/11 | ||||
| Y55F3AL.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55F3AL.1d.1:c.5158-62A>G | ||||
| Intron_number | 20/20 | ||||
| Y55F3AL.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55F3AL.1f.1:c.3445-62A>G | ||||
| Intron_number | 11/11 | ||||
| Y55F3AL.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55F3AL.1b.1:c.5758-62A>G | ||||
| Intron_number | 23/24 | ||||
| Y55F3AL.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55F3AL.1a.1:c.5725-62A>G | ||||
| Intron_number | 23/24 | ||||
| Y55F3AL.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55F3AL.1c.1:c.5191-62A>G | ||||
| Intron_number | 20/20 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw50457 | ||||
| Method | WGS_Hawaiian_Waterston |
