WormBase Tree Display for Variation: WBVar00183162
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WBVar00183162 | Name | Public_name | WBVar00183162 | ||
---|---|---|---|---|---|
Other_name | haw50438 | ||||
cewivar00030518 | |||||
Y55F3AL.1f.1:c.2110-108C>T | |||||
Y55F3AL.1b.1:c.4423-108C>T | |||||
Y55F3AL.1d.1:c.3856-108C>T | |||||
Y55F3AL.1a.1:c.4423-108C>T | |||||
Y55F3AL.1e.1:c.2110-108C>T | |||||
Y55F3AL.1c.1:c.3856-108C>T | |||||
HGVSg | CHROMOSOME_IV:g.978750C>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y55F3AL | |
Flanking_sequences | aatacagttttttggaaaaattatt | atctgccagaaatttgcccaagatt | |||
Mapping_target | Y55F3AL | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (21) | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00004047 | |||
Transcript | Y55F3AL.1e.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3AL.1e.1:c.2110-108C>T | ||||
Intron_number | 7/11 | ||||
Y55F3AL.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3AL.1d.1:c.3856-108C>T | ||||
Intron_number | 16/20 | ||||
Y55F3AL.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3AL.1f.1:c.2110-108C>T | ||||
Intron_number | 7/11 | ||||
Y55F3AL.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3AL.1b.1:c.4423-108C>T | ||||
Intron_number | 19/24 | ||||
Y55F3AL.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3AL.1a.1:c.4423-108C>T | ||||
Intron_number | 19/24 | ||||
Y55F3AL.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3AL.1c.1:c.3856-108C>T | ||||
Intron_number | 16/20 | ||||
Remark | [20081124 db] this Variation was previously named hw50438 | ||||
Method | WGS_Hawaiian_Waterston |