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WormBase Tree Display for Variation: WBVar00183153

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Name Class

WBVar00183153EvidencePaper_evidenceWBPaper00038208
NamePublic_nameWBVar00183153
Other_namehaw50429
haw148424
cewivar00030499
Y55F3AL.1d.1:c.2438-12T>A
Y55F3AL.1c.1:c.2438-12T>A
Y55F3AL.1b.1:c.3005-12T>A
Y55F3AL.1a.1:c.3005-12T>A
Y55F3AL.1f.1:c.692-12T>A
Y55F3AL.1e.1:c.692-12T>A
HGVSgCHROMOSOME_IV:g.974458T>A
Sequence_detailsSMapS_parentSequenceY55F3AL
Flanking_sequencesttttttgaaatttttaaaaatttttatccattccaggagccgaagttact
Mapping_targetY55F3AL
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (19)
LaboratoryRW
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00568289
StatusLive
AffectsGeneWBGene00004047
TranscriptY55F3AL.1e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1e.1:c.692-12T>A
Intron_number2/11
Y55F3AL.1d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1d.1:c.2438-12T>A
Intron_number11/20
Y55F3AL.1f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1f.1:c.692-12T>A
Intron_number2/11
Y55F3AL.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1b.1:c.3005-12T>A
Intron_number14/24
Y55F3AL.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1a.1:c.3005-12T>A
Intron_number14/24
Y55F3AL.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1c.1:c.2438-12T>A
Intron_number11/20
ReferenceWBPaper00038208
Remark[20081124 db] this Variation was previously named hw50429
MethodWGS_Hawaiian_Waterston