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WormBase Tree Display for Variation: WBVar00178939

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Name Class

WBVar00178939NamePublic_nameWBVar00178939
Other_nameuCE3-1182
haw46215
haw145423
cewivar00023990
Y39A1A.13a.1:c.636+120T>A
Y39A1A.13b.2:c.264+120T>A
Y39A1A.13b.1:c.264+120T>A
Y39A1A.13b.3:c.264+120T>A
HGVSgCHROMOSOME_III:g.10647410T>A
Sequence_detailsSMapS_parentSequenceY39A1A
Flanking_sequencesatcaaaaattgtagttgttttttttattttctttttagaaagaaaatgtt
Mapping_targetY39A1A
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (23)
LaboratoryRW
AX
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
SNP_Swan
HistoryAcquires_mergeWBVar01268187
WBVar00270001
WBVar01333215
WBVar00565288
StatusLive
AffectsGeneWBGene00012651
TranscriptY39A1A.13b.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39A1A.13b.3:c.264+120T>A
Intron_number2/6
Y39A1A.13b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39A1A.13b.1:c.264+120T>A
Intron_number4/7
Y39A1A.13a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39A1A.13a.1:c.636+120T>A
Intron_number4/8
Y39A1A.13b.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39A1A.13b.2:c.264+120T>A
Intron_number3/7
ReferenceWBPaper00038208
WBPaper00037807
WBPaper00005369
Remark[20081124 db] this Variation was previously named hw46215
MethodWGS_Hawaiian_Waterston