WormBase Tree Display for Variation: WBVar00178939
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WBVar00178939 | Name | Public_name | WBVar00178939 | ||
---|---|---|---|---|---|
Other_name | uCE3-1182 | ||||
haw46215 | |||||
haw145423 | |||||
cewivar00023990 | |||||
Y39A1A.13a.1:c.636+120T>A | |||||
Y39A1A.13b.2:c.264+120T>A | |||||
Y39A1A.13b.1:c.264+120T>A | |||||
Y39A1A.13b.3:c.264+120T>A | |||||
HGVSg | CHROMOSOME_III:g.10647410T>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y39A1A | |
Flanking_sequences | atcaaaaattgtagttgtttttttt | attttctttttagaaagaaaatgtt | |||
Mapping_target | Y39A1A | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (23) | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
SNP_Swan | |||||
History | Acquires_merge | WBVar01268187 | |||
WBVar00270001 | |||||
WBVar01333215 | |||||
WBVar00565288 | |||||
Status | Live | ||||
Affects | Gene | WBGene00012651 | |||
Transcript | Y39A1A.13b.3 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y39A1A.13b.3:c.264+120T>A | ||||
Intron_number | 2/6 | ||||
Y39A1A.13b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y39A1A.13b.1:c.264+120T>A | ||||
Intron_number | 4/7 | ||||
Y39A1A.13a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y39A1A.13a.1:c.636+120T>A | ||||
Intron_number | 4/8 | ||||
Y39A1A.13b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y39A1A.13b.2:c.264+120T>A | ||||
Intron_number | 3/7 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
WBPaper00005369 | |||||
Remark | [20081124 db] this Variation was previously named hw46215 | ||||
Method | WGS_Hawaiian_Waterston |