WormBase Tree Display for Variation: WBVar00176686
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| WBVar00176686 | Name | Public_name | WBVar00176686 | ||
|---|---|---|---|---|---|
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_II:g.12073701C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y17G7B | |
| Flanking_sequences | acttctcatcgagcatattaatctt | gctccattgagcaataaaaactcta | |||
| Mapping_target | Y17G7B | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (15) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01377905 | |||
| WBVar00553685 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000565 | |||
| Transcript | Y17G7B.15d.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y17G7B.15d.1:c.636G>A | ||||
| HGVSp | CE51873:p.Ala212= | ||||
| cDNA_position | 636 | ||||
| CDS_position | 636 | ||||
| Protein_position | 212 | ||||
| Exon_number | 2/4 | ||||
| Codon_change | gcG/gcA | ||||
| Amino_acid_change | A | ||||
| Y17G7B.15a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y17G7B.15a.1:c.2145G>A | ||||
| HGVSp | CE28110:p.Ala715= | ||||
| cDNA_position | 2152 | ||||
| CDS_position | 2145 | ||||
| Protein_position | 715 | ||||
| Exon_number | 11/14 | ||||
| Codon_change | gcG/gcA | ||||
| Amino_acid_change | A | ||||
| Y17G7B.15c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y17G7B.15c.1:c.1392G>A | ||||
| HGVSp | CE51896:p.Ala464= | ||||
| cDNA_position | 1392 | ||||
| CDS_position | 1392 | ||||
| Protein_position | 464 | ||||
| Exon_number | 5/7 | ||||
| Codon_change | gcG/gcA | ||||
| Amino_acid_change | A | ||||
| Y17G7B.15b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y17G7B.15b.1:c.1893G>A | ||||
| HGVSp | CE25223:p.Ala631= | ||||
| cDNA_position | 1896 | ||||
| CDS_position | 1893 | ||||
| Protein_position | 631 | ||||
| Exon_number | 6/9 | ||||
| Codon_change | gcG/gcA | ||||
| Amino_acid_change | A | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw29936 | ||||
| Method | WGS_Hawaiian_Waterston |
