WormBase Tree Display for Variation: WBVar00174866
expand all nodes | collapse all nodes | view schema
| WBVar00174866 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00174866 | |||
| Other_name | pas39947 | ||||
| haw28116 | |||||
| cewivar00093868 | |||||
| R53.3b.1:c.171T>G | |||||
| CE03572:p.Leu278= | |||||
| R53.3a.1:c.834T>G | |||||
| CE03573:p.Leu57= | |||||
| R53.3b.2:c.171T>G | |||||
| HGVSg | CHROMOSOME_II:g.9960956T>G | ||||
| Sequence_details | SMap | S_parent | Sequence | R53 | |
| Flanking_sequences | attttcaggcaccacatttcccgct | gcttttcttgccgccaatccagaag | |||
| Mapping_target | R53 | ||||
| Type_of_mutation | Substitution | T | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (36) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| History | Acquires_merge | WBVar00228171 | |||
| WBVar01375384 | |||||
| WBVar01310266 | |||||
| WBVar01243599 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00001207 | |||
| Transcript | R53.3b.2 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | R53.3b.2:c.171T>G | ||||
| HGVSp | CE03573:p.Leu57= | ||||
| cDNA_position | 273 | ||||
| CDS_position | 171 | ||||
| Protein_position | 57 | ||||
| Exon_number | 3/7 | ||||
| Codon_change | ctT/ctG | ||||
| Amino_acid_change | L | ||||
| R53.3a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | R53.3a.1:c.834T>G | ||||
| HGVSp | CE03572:p.Leu278= | ||||
| cDNA_position | 835 | ||||
| CDS_position | 834 | ||||
| Protein_position | 278 | ||||
| Exon_number | 8/12 | ||||
| Codon_change | ctT/ctG | ||||
| Amino_acid_change | L | ||||
| R53.3b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | R53.3b.1:c.171T>G | ||||
| HGVSp | CE03573:p.Leu57= | ||||
| cDNA_position | 716 | ||||
| CDS_position | 171 | ||||
| Protein_position | 57 | ||||
| Exon_number | 7/11 | ||||
| Codon_change | ctT/ctG | ||||
| Amino_acid_change | L | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw28116 | ||||
| Method | WGS_Hawaiian_Waterston |
