WormBase Tree Display for Variation: WBVar00174457
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WBVar00174457 | Name | Public_name | WBVar00174457 | ||
---|---|---|---|---|---|
Other_name | snp_C16D2[1] | ||||
haw27707 | |||||
haw132223 | |||||
cewivar00185521 | |||||
Y9C2UA.1a.2:c.-3+91A>T | |||||
Y9C2UA.1b.1:c.122-987A>T | |||||
Y9C2UA.1a.1:c.-2-987A>T | |||||
Y9C2UA.1c.1:c.199+91A>T | |||||
HGVSg | CHROMOSOME_II:g.9141923A>T | ||||
Sequence_details | SMap | S_parent | Sequence | C16D2 | |
Flanking_sequences | aaaaagttattcataattgaaattt | tttccgtcaacaaattctaatttaa | |||
Mapping_target | C16D2 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_De_Bono | |||||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
SNP_Wicks | |||||
History | Acquires_merge | WBVar00243288 | |||
WBVar00552088 | |||||
WBVar01374843 | |||||
Status | Live | ||||
Affects | Gene | WBGene00012421 | |||
Transcript | Y9C2UA.1a.2 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y9C2UA.1a.2:c.-3+91A>T | ||||
Intron_number | 1/8 | ||||
Y9C2UA.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y9C2UA.1a.1:c.-2-987A>T | ||||
Intron_number | 1/8 | ||||
Y9C2UA.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y9C2UA.1b.1:c.122-987A>T | ||||
Intron_number | 2/7 | ||||
Y9C2UA.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y9C2UA.1c.1:c.199+91A>T | ||||
Intron_number | 1/6 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw27707 | ||||
Method | WGS_Hawaiian_Waterston |