WormBase Tree Display for Variation: WBVar00173052
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| WBVar00173052 | Name | Public_name | WBVar00173052 | ||
|---|---|---|---|---|---|
| Other_name | pas37802 | ||||
| haw26302 | |||||
| haw131314 | |||||
| cewivar00091384 | |||||
| T02G5.15.2:c.-201-88A>T | |||||
| T02G5.14.1:c.-852-261A>T | |||||
| T02G5.15.1:c.-28-261A>T | |||||
| T02G5.15.3:c.-289A>T | |||||
| HGVSg | CHROMOSOME_II:g.7087072A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T02G5 | |
| Flanking_sequences | tcatttttgcaactaataaaaaaaa | gtgaagcacactgctaagcgaaact | |||
| Mapping_target | T02G5 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (162) | |||||
| Laboratory | RW | ||||
| QX | |||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| WBPerson4037 | |||||
| WBPerson1730 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar00226026 | |||
| WBVar01241048 | |||||
| WBVar00551179 | |||||
| WBVar01438362 | |||||
| WBVar01307430 | |||||
| WBVar01373081 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00020170 | |||
| WBGene00206521 | |||||
| Transcript | T02G5.15.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02G5.15.1:c.-28-261A>T | ||||
| Intron_number | 1/6 | ||||
| T02G5.15.3 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02G5.15.3:c.-289A>T | ||||
| cDNA_position | 1813 | ||||
| Exon_number | 1/5 | ||||
| T02G5.15.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02G5.15.2:c.-201-88A>T | ||||
| Intron_number | 1/5 | ||||
| T02G5.14.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T02G5.14.1:c.-852-261A>T | ||||
| Intron_number | 1/6 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00040707 | |||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw26302 | ||||
| Method | WGS_Hawaiian_Waterston |
