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WormBase Tree Display for Variation: WBVar00166542

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Name Class

WBVar00166542NamePublic_nameWBVar00166542
Other_namehaw19792
haw126340
cewivar00180512
F54A3.6b.2:c.*95C>A
F54A3.6b.1:c.*72+23C>A
F54A3.6a.1:c.580-23C>A
HGVSgCHROMOSOME_II:g.2230565G>T
Sequence_detailsSMapS_parentSequenceF54A3
Flanking_sequencestttctgaaaattagcgaattttcgggttttgggcgattttcagtaacttt
Mapping_targetF54A3
Type_of_mutationSubstitutionGT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisWGS_De_Bono
WGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
LaboratoryRW
AX
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01363013
WBVar00546205
StatusLive
AffectsGeneWBGene00018785
TranscriptF54A3.6a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF54A3.6a.1:c.580-23C>A
Intron_number10/14
F54A3.6b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF54A3.6b.1:c.*72+23C>A
Intron_number11/14
F54A3.6b.2VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScF54A3.6b.2:c.*95C>A
cDNA_position796
Exon_number11/14
ReferenceWBPaper00038208
WBPaper00037807
Remark[20081124 db] this Variation was previously named hw19792
MethodWGS_Hawaiian_Waterston