WormBase Tree Display for Variation: WBVar00166542
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WBVar00166542 | Name | Public_name | WBVar00166542 | ||
---|---|---|---|---|---|
Other_name | haw19792 | ||||
haw126340 | |||||
cewivar00180512 | |||||
F54A3.6b.2:c.*95C>A | |||||
F54A3.6b.1:c.*72+23C>A | |||||
F54A3.6a.1:c.580-23C>A | |||||
HGVSg | CHROMOSOME_II:g.2230565G>T | ||||
Sequence_details | SMap | S_parent | Sequence | F54A3 | |
Flanking_sequences | tttctgaaaattagcgaattttcgg | gttttgggcgattttcagtaacttt | |||
Mapping_target | F54A3 | ||||
Type_of_mutation | Substitution | G | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01363013 | |||
WBVar00546205 | |||||
Status | Live | ||||
Affects | Gene | WBGene00018785 | |||
Transcript | F54A3.6a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F54A3.6a.1:c.580-23C>A | ||||
Intron_number | 10/14 | ||||
F54A3.6b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54A3.6b.1:c.*72+23C>A | ||||
Intron_number | 11/14 | ||||
F54A3.6b.2 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54A3.6b.2:c.*95C>A | ||||
cDNA_position | 796 | ||||
Exon_number | 11/14 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw19792 | ||||
Method | WGS_Hawaiian_Waterston |