WormBase Tree Display for Variation: WBVar00164541
expand all nodes | collapse all nodes | view schema
WBVar00164541 | Name | Public_name | WBVar00164541 | ||
---|---|---|---|---|---|
Other_name | haw17791 | ||||
haw124939 | |||||
cewivar00176870 | |||||
CE39154:p.Cys420= | |||||
F47F6.3.1:c.1260T>C | |||||
HGVSg | CHROMOSOME_II:g.1264425A>G | ||||
Sequence_details | SMap | S_parent | Sequence | F47F6 | |
Flanking_sequences | taacccttgcactcaccgggtacct | caataggcgtagacaatactcttat | |||
Mapping_target | F47F6 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis (4) | |||||
History | Acquires_merge | WBVar01360121 | |||
WBVar00544804 | |||||
Status | Live | ||||
Affects | Gene | WBGene00018573 | |||
Transcript | F47F6.3.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F47F6.3.1:c.1260T>C | ||||
HGVSp | CE39154:p.Cys420= | ||||
cDNA_position | 1260 | ||||
CDS_position | 1260 | ||||
Protein_position | 420 | ||||
Exon_number | 7/12 | ||||
Codon_change | tgT/tgC | ||||
Amino_acid_change | C | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw17791 | ||||
Method | WGS_Hawaiian_Waterston |