WormBase Tree Display for Variation: WBVar00158966
expand all nodes | collapse all nodes | view schema
| WBVar00158966 | Name | Public_name | WBVar00158966 | ||
|---|---|---|---|---|---|
| Other_name | haw12216 | ||||
| haw120889 | |||||
| cewivar00172500 | |||||
| CE42166:p.Ter660= | |||||
| T09E11.4.1:c.1979A>G | |||||
| HGVSg | CHROMOSOME_I:g.12363415A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | T09E11 | |
| Flanking_sequences | acaaagatttgtcgagatttagaat | aagaattgaatctataagtatatgt | |||
| Mapping_target | T09E11 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| Laboratory | RW | ||||
| QX | |||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| WBPerson1730 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01433728 | |||
| WBVar01351841 | |||||
| WBVar00540754 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00011653 | |||
| Transcript | T09E11.4.1 | VEP_consequence | stop_retained_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | T09E11.4.1:c.1979A>G | ||||
| HGVSp | CE42166:p.Ter660= | ||||
| cDNA_position | 1979 | ||||
| CDS_position | 1979 | ||||
| Protein_position | 660 | ||||
| Exon_number | 10/10 | ||||
| Codon_change | tAa/tGa | ||||
| Amino_acid_change | * | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00040707 | |||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw12216 | ||||
| Method | WGS_Hawaiian_Waterston |
