WormBase Tree Display for Variation: WBVar00158609
expand all nodes | collapse all nodes | view schema
WBVar00158609 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00158609 | |||
Other_name | haw11859 | ||||
cewivar00171896 | |||||
R05D7.3a.1:c.-64+2441G>A | |||||
R05D7.3b.1:c.162+2441G>A | |||||
HGVSg | CHROMOSOME_I:g.12174696C>T | ||||
Sequence_details | SMap | S_parent | Sequence | R05D7 | |
Flanking_sequences | aaatcagaaaaatgagagaaaactt | aaaaaaactaacataagttgtaatt | |||
Mapping_target | R05D7 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01351219 | |||
Status | Live | ||||
Affects | Gene | WBGene00011028 | |||
Transcript | R05D7.3b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | R05D7.3b.1:c.162+2441G>A | ||||
Intron_number | 2/6 | ||||
R05D7.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R05D7.3a.1:c.-64+2441G>A | ||||
Intron_number | 2/8 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw11859 | ||||
Method | WGS_Hawaiian_Waterston |