WormBase Tree Display for Variation: WBVar00155547
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| WBVar00155547 | Name | Public_name | WBVar00155547 | ||
|---|---|---|---|---|---|
| Other_name | uCE1-1010 | ||||
| haw8797 | |||||
| haw118414 | |||||
| cewivar00168329 | |||||
| W10D5.3c.2:c.*90C>T | |||||
| W10D5.3a.2:c.*90C>T | |||||
| W10D5.3e.1:c.*90C>T | |||||
| W10D5.3c.3:c.*90C>T | |||||
| W10D5.3c.1:c.*90C>T | |||||
| W10D5.3a.1:c.*90C>T | |||||
| HGVSg | CHROMOSOME_I:g.9101085G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | W10D5 | |
| Flanking_sequences | agagaaatgtgagatatttgattgg | tcggttgaagttccgaacattaaat | |||
| Mapping_target | W10D5 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_De_Bono | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar01346806 | |||
| WBVar00267170 | |||||
| WBVar00538279 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00001574 | |||
| Transcript | W10D5.3c.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | W10D5.3c.1:c.*90C>T | ||||
| cDNA_position | 2476 | ||||
| Exon_number | 16/16 | ||||
| W10D5.3a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W10D5.3a.1:c.*90C>T | ||||
| cDNA_position | 2188 | ||||
| Exon_number | 15/15 | ||||
| W10D5.3e.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W10D5.3e.1:c.*90C>T | ||||
| cDNA_position | 2139 | ||||
| Exon_number | 15/15 | ||||
| W10D5.3c.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W10D5.3c.2:c.*90C>T | ||||
| cDNA_position | 2460 | ||||
| Exon_number | 16/16 | ||||
| W10D5.3c.3 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W10D5.3c.3:c.*90C>T | ||||
| cDNA_position | 3034 | ||||
| Exon_number | 16/16 | ||||
| W10D5.3a.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W10D5.3a.2:c.*90C>T | ||||
| cDNA_position | 2157 | ||||
| Exon_number | 15/15 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| WBPaper00005369 | |||||
| Remark | [20081124 db] this Variation was previously named hw8797 | ||||
| Method | WGS_Hawaiian_Waterston |
