WormBase Tree Display for Variation: WBVar00153609
expand all nodes | collapse all nodes | view schema
| WBVar00153609 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00153609 | |||
| Other_name | haw6859 | ||||
| cewivar00166118 | |||||
| C09D4.1b.3:c.291-509A>G | |||||
| C09D4.1b.2:c.291-509A>G | |||||
| C09D4.1a.1:c.624-509A>G | |||||
| C09D4.1b.1:c.291-509A>G | |||||
| HGVSg | CHROMOSOME_I:g.5501021A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | F59A3 | |
| Flanking_sequences | ttgcaaagttgccaggaatagaagg | ggtgatcggaaaaagagagagagag | |||
| Mapping_target | F59A3 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01282800 | |||
| WBVar01344409 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00015632 | |||
| Transcript | C09D4.1a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D4.1a.1:c.624-509A>G | ||||
| Intron_number | 6/15 | ||||
| C09D4.1b.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D4.1b.3:c.291-509A>G | ||||
| Intron_number | 4/13 | ||||
| C09D4.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D4.1b.1:c.291-509A>G | ||||
| Intron_number | 5/14 | ||||
| C09D4.1b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D4.1b.2:c.291-509A>G | ||||
| Intron_number | 6/15 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw6859 | ||||
| Method | WGS_Hawaiian_Waterston |
