WormBase Tree Display for Variation: WBVar00152172
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| WBVar00152172 | Name | Public_name | WBVar00152172 | ||
|---|---|---|---|---|---|
| Other_name | haw5422 | ||||
| haw116200 | |||||
| cewivar00164773 | |||||
| Y44E3A.6a.2:c.199-56T>C | |||||
| Y44E3A.6c.1:c.199-56T>C | |||||
| Y44E3A.6d.1:c.199-56T>C | |||||
| Y44E3A.6b.1:c.199-56T>C | |||||
| Y44E3A.6a.1:c.199-56T>C | |||||
| HGVSg | CHROMOSOME_I:g.3348676A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | W05F2 | |
| Flanking_sequences | gttttttttttaaatttactttaaa | aaggagtatcgtcaatgtgggaaat | |||
| Mapping_target | W05F2 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01342415 | |||
| WBVar00536065 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021551 | |||
| Transcript | Y44E3A.6c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y44E3A.6c.1:c.199-56T>C | ||||
| Intron_number | 3/13 | ||||
| Y44E3A.6a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y44E3A.6a.2:c.199-56T>C | ||||
| Intron_number | 3/13 | ||||
| Y44E3A.6d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y44E3A.6d.1:c.199-56T>C | ||||
| Intron_number | 2/12 | ||||
| Y44E3A.6a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y44E3A.6a.1:c.199-56T>C | ||||
| Intron_number | 3/13 | ||||
| Y44E3A.6b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y44E3A.6b.1:c.199-56T>C | ||||
| Intron_number | 3/13 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw5422 | ||||
| Method | WGS_Hawaiian_Waterston |
