WormBase Tree Display for Variation: WBVar00152164
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WBVar00152164 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00152164 | |||
Other_name | haw5414 | ||||
cewivar00072741 | |||||
Y44E3A.6a.1:c.1969-199A>C | |||||
Y44E3A.6b.1:c.1969-199A>C | |||||
Y44E3A.6d.1:c.1975-199A>C | |||||
Y44E3A.6c.1:c.1975-199A>C | |||||
Y44E3A.6a.2:c.1969-199A>C | |||||
HGVSg | CHROMOSOME_I:g.3342825T>G | ||||
Sequence_details | SMap | S_parent | Sequence | Y44E3A | |
Flanking_sequences | ccgatttttacaagaattttctaaa | tttttgtaaaaattttaaagaaaat | |||
Mapping_target | Y44E3A | ||||
Type_of_mutation | Substitution | T | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | WGS_De_Bono | |||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006642 | From_analysis | WGS_De_Bono | |||
WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01421896 | |||
WBVar01342400 | |||||
Status | Live | ||||
Affects | Gene | WBGene00021551 | |||
Transcript | Y44E3A.6c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y44E3A.6c.1:c.1975-199A>C | ||||
Intron_number | 10/13 | ||||
Y44E3A.6a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y44E3A.6a.2:c.1969-199A>C | ||||
Intron_number | 10/13 | ||||
Y44E3A.6d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y44E3A.6d.1:c.1975-199A>C | ||||
Intron_number | 9/12 | ||||
Y44E3A.6a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y44E3A.6a.1:c.1969-199A>C | ||||
Intron_number | 10/13 | ||||
Y44E3A.6b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y44E3A.6b.1:c.1969-199A>C | ||||
Intron_number | 10/13 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw5414 | ||||
Method | WGS_Hawaiian_Waterston |