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WormBase Tree Display for Variation: WBVar00151861

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Name Class

WBVar00151861NamePublic_nameWBVar00151861
Other_namesnp_Y54E10A[6]
haw5111
cewivar00072579
Y54E10A.11.1:c.4279-552G>A
Y54E10A.11.2:c.4279-552G>A
HGVSgCHROMOSOME_I:g.3177126C>T
Sequence_detailsSMapS_parentSequenceY54E10A
Flanking_sequencestcagaaaatcgtaaaatttcgatttcaattttctcaaaatttttttctga
Mapping_targetY54E10A
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00000034From_analysisMillion_mutation_project_reanalysis
WBStrain00004599From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisSNP_Wicks
WGS_De_Bono
WGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
WBStrain00006642From_analysisWGS_De_Bono
WBStrain00006643From_analysisMillion_mutation_project_reanalysis
WBStrain00006645From_analysisMillion_mutation_project_reanalysis
LaboratoryRW
AX
PersonWBPerson1562
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
Million_mutation_project_reanalysis
SNP_Wicks
HistoryAcquires_mergeWBVar00247589
WBVar01341983
WBVar01421497
StatusLive
AffectsGeneWBGene00021831
TranscriptY54E10A.11.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54E10A.11.1:c.4279-552G>A
Intron_number14/15
Y54E10A.11.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54E10A.11.2:c.4279-552G>A
Intron_number14/15
ReferenceWBPaper00004703
WBPaper00037807
Remark[20081124 db] this Variation was previously named hw5111
MethodWGS_Hawaiian_Waterston