WormBase Tree Display for Variation: WBVar00151861
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WBVar00151861 | Name | Public_name | WBVar00151861 | ||
---|---|---|---|---|---|
Other_name | snp_Y54E10A[6] | ||||
haw5111 | |||||
cewivar00072579 | |||||
Y54E10A.11.1:c.4279-552G>A | |||||
Y54E10A.11.2:c.4279-552G>A | |||||
HGVSg | CHROMOSOME_I:g.3177126C>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y54E10A | |
Flanking_sequences | tcagaaaatcgtaaaatttcgattt | caattttctcaaaatttttttctga | |||
Mapping_target | Y54E10A | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004602 | From_analysis | SNP_Wicks | |||
WGS_De_Bono | |||||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00006642 | From_analysis | WGS_De_Bono | |||
WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
SNP_Wicks | |||||
History | Acquires_merge | WBVar00247589 | |||
WBVar01341983 | |||||
WBVar01421497 | |||||
Status | Live | ||||
Affects | Gene | WBGene00021831 | |||
Transcript | Y54E10A.11.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54E10A.11.1:c.4279-552G>A | ||||
Intron_number | 14/15 | ||||
Y54E10A.11.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54E10A.11.2:c.4279-552G>A | ||||
Intron_number | 14/15 | ||||
Reference | WBPaper00004703 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw5111 | ||||
Method | WGS_Hawaiian_Waterston |