WormBase Tree Display for Variation: WBVar00149706
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WBVar00149706 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00149706 | |||
Other_name | haw2956 | ||||
cewivar00162353 | |||||
Y71G12A.2b.1:c.3061+88G>T | |||||
Y71G12A.2c.4:c.562+88G>T | |||||
Y71G12A.2c.2:c.562+88G>T | |||||
Y71G12A.2c.1:c.562+88G>T | |||||
Y71G12A.2c.3:c.562+88G>T | |||||
HGVSg | CHROMOSOME_I:g.1918319G>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y51F10 | |
Flanking_sequences | aattaaaaaaaaaactttttaaggt | gagcagcagcgccagtgggggattt | |||
Mapping_target | Y51F10 | ||||
Type_of_mutation | Substitution | G | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01321617 | |||
Status | Live | ||||
Affects | Gene | WBGene00022138 | |||
Transcript | Y71G12A.2c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12A.2c.1:c.562+88G>T | ||||
Intron_number | 12/14 | ||||
Y71G12A.2c.4 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12A.2c.4:c.562+88G>T | ||||
Intron_number | 3/5 | ||||
Y71G12A.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12A.2b.1:c.3061+88G>T | ||||
Intron_number | 13/15 | ||||
Y71G12A.2c.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12A.2c.2:c.562+88G>T | ||||
Intron_number | 9/11 | ||||
Y71G12A.2c.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12A.2c.3:c.562+88G>T | ||||
Intron_number | 7/9 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw2956 | ||||
Method | WGS_Hawaiian_Waterston |