WormBase Tree Display for Variation: WBVar00148550
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WBVar00148550 | Name | Public_name | WBVar00148550 | ||
---|---|---|---|---|---|
Other_name | haw1800 | ||||
haw113491 | |||||
cewivar00161606 | |||||
Y48G8AL.1c.1:c.1626+293A>G | |||||
Y48G8AL.1a.2:c.2754+293A>G | |||||
Y48G8AL.1d.1:c.1209+293A>G | |||||
Y48G8AL.1a.1:c.2754+293A>G | |||||
Y48G8AL.1b.1:c.1761+293A>G | |||||
Y48G8AL.1e.1:c.336+293A>G | |||||
HGVSg | CHROMOSOME_I:g.1248251A>G | ||||
Sequence_details | SMap | S_parent | Sequence | Y48G8AL | |
Flanking_sequences | tgcccaaaaaatgacaaaaaaacaa | ttgggcaaaaataaaaaattgttta | |||
Mapping_target | Y48G8AL | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00533356 | |||
WBVar01303128 | |||||
Status | Live | ||||
Affects | Gene | WBGene00021685 | |||
Transcript | Y48G8AL.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.1b.1:c.1761+293A>G | ||||
Intron_number | 11/12 | ||||
Y48G8AL.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.1c.1:c.1626+293A>G | ||||
Intron_number | 10/11 | ||||
Y48G8AL.1e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.1e.1:c.336+293A>G | ||||
Intron_number | 2/3 | ||||
Y48G8AL.1a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.1a.2:c.2754+293A>G | ||||
Intron_number | 17/19 | ||||
Y48G8AL.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.1a.1:c.2754+293A>G | ||||
Intron_number | 17/19 | ||||
Y48G8AL.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.1d.1:c.1209+293A>G | ||||
Intron_number | 8/9 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw1800 | ||||
Method | WGS_Hawaiian_Waterston |