WormBase Tree Display for Variation: WBVar00148541
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| WBVar00148541 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00148541 | |||
| Other_name | haw1791 | ||||
| cewivar00119590 | |||||
| Y48G8AL.1a.2:c.2181-569T>C | |||||
| Y48G8AL.1a.1:c.2181-569T>C | |||||
| Y48G8AL.1b.1:c.1188-569T>C | |||||
| Y48G8AL.1d.1:c.636-569T>C | |||||
| Y48G8AL.1c.1:c.1053-569T>C | |||||
| HGVSg | CHROMOSOME_I:g.1244658T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y48G8AL | |
| Flanking_sequences | gaatttcgtaattagatttcaaaaa | aaaaattttttatggtcggtcaaaa | |||
| Mapping_target | Y48G8AL | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006642 | From_analysis | WGS_De_Bono | |||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01417753 | |||
| WBVar01302962 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021685 | |||
| Transcript | Y48G8AL.1b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y48G8AL.1b.1:c.1188-569T>C | ||||
| Intron_number | 8/12 | ||||
| Y48G8AL.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y48G8AL.1c.1:c.1053-569T>C | ||||
| Intron_number | 7/11 | ||||
| Y48G8AL.1a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y48G8AL.1a.2:c.2181-569T>C | ||||
| Intron_number | 14/19 | ||||
| Y48G8AL.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y48G8AL.1a.1:c.2181-569T>C | ||||
| Intron_number | 14/19 | ||||
| Y48G8AL.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y48G8AL.1d.1:c.636-569T>C | ||||
| Intron_number | 5/9 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw1791 | ||||
| Method | WGS_Hawaiian_Waterston |
