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WormBase Tree Display for Variation: WBVar00148539

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Name Class

WBVar00148539NamePublic_nameWBVar00148539
Other_namehaw1789
haw113481
cewivar00068119
Y48G8AL.1a.1:c.2180+1011C>A
Y48G8AL.1d.1:c.635+1011C>A
Y48G8AL.1a.2:c.2180+1011C>A
Y48G8AL.1c.1:c.1052+1011C>A
Y48G8AL.1b.1:c.1187+1011C>A
HGVSgCHROMOSOME_I:g.1243868C>A
Sequence_detailsSMapS_parentSequenceY48G8AL
Flanking_sequencesaaacactattttttaatttaaaaaattttgaaaaaaattgaactccttat
Mapping_targetY48G8AL
Type_of_mutationSubstitutionCA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (31)
LaboratoryRW
AX
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01302951
WBVar00533346
StatusLive
AffectsGeneWBGene00021685
TranscriptY48G8AL.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48G8AL.1b.1:c.1187+1011C>A
Intron_number8/12
Y48G8AL.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48G8AL.1c.1:c.1052+1011C>A
Intron_number7/11
Y48G8AL.1a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48G8AL.1a.2:c.2180+1011C>A
Intron_number14/19
Y48G8AL.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48G8AL.1a.1:c.2180+1011C>A
Intron_number14/19
Y48G8AL.1d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48G8AL.1d.1:c.635+1011C>A
Intron_number5/9
ReferenceWBPaper00038208
WBPaper00037807
Remark[20081124 db] this Variation was previously named hw1789
MethodWGS_Hawaiian_Waterston