WormBase Tree Display for Variation: WBVar00147678
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| WBVar00147678 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00147678 | |||
| Other_name | haw928 | ||||
| cewivar00160989 | |||||
| Y65B4A.2b.1:c.158-635A>G | |||||
| Y65B4A.2a.1:c.116-635A>G | |||||
| Y65B4A.7a.1:c.54T>C | |||||
| CE25530:p.Asn18= | |||||
| Y65B4A.2c.1:c.197-635A>G | |||||
| HGVSg | CHROMOSOME_I:g.647172A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y65B4A | |
| Flanking_sequences | ttgttgtgcagcctttgcaatggat | ttatatggaagaacaatcttttgga | |||
| Mapping_target | Y65B4A | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01287795 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00022030 | |||
| WBGene00022026 | |||||
| Transcript | Y65B4A.2b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y65B4A.2b.1:c.158-635A>G | ||||
| Intron_number | 3/8 | ||||
| Y65B4A.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y65B4A.2a.1:c.116-635A>G | ||||
| Intron_number | 2/7 | ||||
| Y65B4A.2c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y65B4A.2c.1:c.197-635A>G | ||||
| Intron_number | 3/8 | ||||
| Y65B4A.7a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y65B4A.7a.1:c.54T>C | ||||
| HGVSp | CE25530:p.Asn18= | ||||
| cDNA_position | 71 | ||||
| CDS_position | 54 | ||||
| Protein_position | 18 | ||||
| Exon_number | 2/6 | ||||
| Codon_change | aaT/aaC | ||||
| Amino_acid_change | N | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw928 | ||||
| Method | WGS_Hawaiian_Waterston |
