WormBase Tree Display for Variation: WBVar00146336
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| WBVar00146336 | Name | Public_name | gm104 | ||||
|---|---|---|---|---|---|---|---|
| Other_name | Y50D4C.1c.1:c.71G>A | ||||||
| Y50D4C.1b.1:c.29G>A | |||||||
| CE43197:p.Trp24Ter | |||||||
| CE33232:p.Trp10Ter | |||||||
| Y50D4C.1a.1:c.71G>A | |||||||
| CE50871:p.Trp24Ter | |||||||
| Y50D4C.1d.1:c.41G>A | |||||||
| CE50774:p.Trp14Ter | |||||||
| HGVSg | CHROMOSOME_V:g.985161G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y50D4C | |||
| Flanking_sequences | tgatgacctacaacgaatcgacaaaaggat | ggtactactcggcggaaatgatgattcaat | |||||
| Mapping_target | Y50D4C | ||||||
| Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00036239 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00047814 | ||||||
| WBStrain00051845 | |||||||
| Laboratory | NG | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006770 | |||||
| Transcript | Y50D4C.1d.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y50D4C.1d.1:c.41G>A | ||||||
| HGVSp | CE50774:p.Trp14Ter | ||||||
| cDNA_position | 41 | ||||||
| CDS_position | 41 | ||||||
| Protein_position | 14 | ||||||
| Exon_number | 1/6 | ||||||
| Codon_change | tGg/tAg | ||||||
| Amino_acid_change | W/* | ||||||
| Y50D4C.1a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y50D4C.1a.1:c.71G>A | ||||||
| HGVSp | CE43197:p.Trp24Ter | ||||||
| cDNA_position | 71 | ||||||
| CDS_position | 71 | ||||||
| Protein_position | 24 | ||||||
| Exon_number | 2/8 | ||||||
| Codon_change | tGg/tAg | ||||||
| Amino_acid_change | W/* | ||||||
| Y50D4C.1b.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y50D4C.1b.1:c.29G>A | ||||||
| HGVSp | CE33232:p.Trp10Ter | ||||||
| cDNA_position | 29 | ||||||
| CDS_position | 29 | ||||||
| Protein_position | 10 | ||||||
| Exon_number | 1/3 | ||||||
| Codon_change | tGg/tAg | ||||||
| Amino_acid_change | W/* | ||||||
| Y50D4C.1c.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y50D4C.1c.1:c.71G>A | ||||||
| HGVSp | CE50871:p.Trp24Ter | ||||||
| cDNA_position | 71 | ||||||
| CDS_position | 71 | ||||||
| Protein_position | 24 | ||||||
| Exon_number | 2/4 | ||||||
| Codon_change | tGg/tAg | ||||||
| Amino_acid_change | W/* | ||||||
| Interactor | WBInteraction000521267 | ||||||
| WBInteraction000521268 | |||||||
| Genetics | Interpolated_map_position | V | -19.8831 | ||||
| Description (2) | |||||||
| Reference | WBPaper00032446 | ||||||
| WBPaper00002978 | |||||||
| WBPaper00036239 | |||||||
| WBPaper00045955 | |||||||
| WBPaper00056964 | |||||||
| Method | Substitution_allele |
