WormBase Tree Display for Variation: WBVar00145856
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WBVar00145856 | Name | Public_name | gk451 | ||||||
---|---|---|---|---|---|---|---|---|---|
HGVSg | CHROMOSOME_I:g.9392866_9393235del | ||||||||
Sequence_details | SMap | S_parent | Sequence | F16A11 | |||||
Flanking_sequences | atgattcactaaccgaatgtccaacaattc | atctcaaaatctttagtcaagaaaacattc | |||||||
Mapping_target | F16A11 | ||||||||
Type_of_mutation | Deletion | ||||||||
PCR_product | GK451_external | ||||||||
GK451_internal | |||||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00036319 | ||||||||
Laboratory | VC | ||||||||
Person | WBPerson427 | ||||||||
KO_consortium_allele | |||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00008877 | |||||||
Transcript | F16A11.2a.1 | VEP_consequence | coding_sequence_variant,5_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | ||||||||
cDNA_position | ?-230 | ||||||||
CDS_position | ?-229 | ||||||||
Protein_position | ?-77 | ||||||||
Exon_number | 1-2/6 | ||||||||
Isolation | Mutagen | TMP/UV | |||||||
Description | Phenotype | WBPhenotype:0000688 | Paper_evidence | WBPaper00045971 | |||||
Curator_confirmed | WBPerson236 | ||||||||
WBPhenotype:0001037 | Paper_evidence | WBPaper00046051 | |||||||
Curator_confirmed | WBPerson13472 | ||||||||
WBPhenotype:0001504 | Paper_evidence | WBPaper00046051 | |||||||
Curator_confirmed | WBPerson13472 | ||||||||
WBPhenotype:0001719 | Paper_evidence | WBPaper00045971 | |||||||
Curator_confirmed | WBPerson236 | ||||||||
EQ_annotations | GO_term | GO:0030968 | PATO:0000460 | Paper_evidence | WBPaper00045971 | ||||
Curator_confirmed | WBPerson236 | ||||||||
Phenotype_not_observed | WBPhenotype:0000054 | Paper_evidence | WBPaper00046051 | ||||||
Curator_confirmed | WBPerson13472 | ||||||||
Reference | WBPaper00046051 | ||||||||
WBPaper00045971 | |||||||||
WBPaper00049237 | |||||||||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||||
Method | KO_consortium_allele |