WormBase Tree Display for Variation: WBVar00145702
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| WBVar00145702 | Name | Public_name | gk295 | ||
|---|---|---|---|---|---|
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_IV:g.9541328_9542221del | ||||
| Sequence_details | SMap | S_parent | Sequence | F56H11 | |
| Flanking_sequences | aataaaaatataaattgagatggatttcag | agaagcatcacaagcaaatacagagtttgg | |||
| Mapping_target | F56H11 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | gk295_external | ||||
| gk295_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035944 | ||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00001403 | |||
| Transcript | F56H11.1e.1 (11) | ||||
| F56H11.1d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F56H11.1d.1:c.277_583+468del | ||||
| cDNA_position | 277-? | ||||
| CDS_position | 277-? | ||||
| Protein_position | 93-? | ||||
| Intron_number | 3-4/11 | ||||
| Exon_number | 3-4/12 | ||||
| F56H11.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F56H11.1a.1:c.277_583+468del | ||||
| cDNA_position | 321-? | ||||
| CDS_position | 277-? | ||||
| Protein_position | 93-? | ||||
| Intron_number | 4-5/15 | ||||
| Exon_number | 4-5/16 | ||||
| F56H11.1g.1 (11) | |||||
| F56H11.1h.1 (11) | |||||
| F56H11.1c.1 (11) | |||||
| F56H11.1f.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F56H11.1f.1:c.277_583+468del | ||||
| cDNA_position | 277-? | ||||
| CDS_position | 277-? | ||||
| Protein_position | 93-? | ||||
| Intron_number | 3-4/11 | ||||
| Exon_number | 3-4/12 | ||||
| F56H11.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F56H11.1b.1:c.277_583+468del | ||||
| cDNA_position | 294-? | ||||
| CDS_position | 277-? | ||||
| Protein_position | 93-? | ||||
| Intron_number | 4-5/15 | ||||
| Exon_number | 4-5/16 | ||||
| Isolation | Mutagen | TMP/UV | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
