WormBase Tree Display for Variation: WBVar00145028

WBVar00145028 Evidence: Paper_evidence: WBPaper00028462
  Name: Public_name: e2832
    HGVSg: CHROMOSOME_X:g.10104589_10109581del
  Sequence_details: SMap: S_parent: Sequence: T06H11
    Flanking_sequences: tccgtttcataatagatgagaatcaagaac acaataaggaaacaaaaacttgcctgccag
    Mapping_target: T06H11
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: CB
    Status: Live
  Affects: Gene: WBGene00195326
      WBGene00198156
      WBGene00012326
      WBGene00006792
    Transcript: T06H11.1f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 4-14/14
        Exon_number: 5-15/15
      T06H11.1e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-12/13
        Exon_number: 3-14/14
      T06H11.1d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-11/11
        Exon_number: 2-12/12
      T06H11.6 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      W07E11.1a.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 7268-?
        Exon_number: 20/20
      T06H11.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 3-12/12
        Exon_number: 4-13/13
      T06H11.12 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T06H11.1g.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-11/12
        Exon_number: 3-13/13
      T06H11.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 218-?
        CDS_position: 218-?
        Protein_position: 73-?
        Intron_number: 1-10/11
        Exon_number: 1-12/12
      T06H11.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-12/13
        Exon_number: 3-14/14
  Genetics: Interpolated_map_position: X 1.74745
  Reference: WBPaper00028462
  Method: Deletion_allele