WormBase Tree Display for Variation: WBVar00145017

WBVar00145017 Evidence: Paper_evidence: WBPaper00028462
  Name: Public_name: e2820
    Other_name: T06H11.1g.1:c.137-1318_1227del
      T06H11.1f.1:c.413-1318_1542del
      T06H11.1b.1:c.263-1318_1353del
      T06H11.1c.1:c.149-1318_1278del
      T06H11.1d.1:c.293-1318_1422del
      T06H11.1e.1:c.67+423_1197del
    HGVSg: CHROMOSOME_X:g.10105589_10110649del
  Sequence_details: SMap: S_parent: Sequence: T06H11
    Flanking_sequences: ttcaattaactaccgttttgctcgaccaaa gtggaccgcacctccggcgcggccccgact
    Mapping_target: T06H11
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: CB
    Status: Live
  Affects: Gene: WBGene00195326
      WBGene00198156
      WBGene00006792
    Transcript: T06H11.1f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T06H11.1f.1:c.413-1318_1542del
        cDNA_position: ?-1542
        CDS_position: ?-1542
        Protein_position: ?-514
        Intron_number: 4-12/14
        Exon_number: 5-13/15
      T06H11.1e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T06H11.1e.1:c.67+423_1197del
        cDNA_position: ?-1279
        CDS_position: ?-1197
        Protein_position: ?-399
        Intron_number: 2-10/13
        Exon_number: 3-11/14
      T06H11.1d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T06H11.1d.1:c.293-1318_1422del
        cDNA_position: ?-1422
        CDS_position: ?-1422
        Protein_position: ?-474
        Intron_number: 1-9/11
        Exon_number: 2-10/12
      T06H11.6 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T06H11.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T06H11.1b.1:c.263-1318_1353del
        cDNA_position: ?-1403
        CDS_position: ?-1353
        Protein_position: ?-451
        Intron_number: 3-10/12
        Exon_number: 4-11/13
      T06H11.12 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T06H11.1g.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T06H11.1g.1:c.137-1318_1227del
        cDNA_position: ?-1369
        CDS_position: ?-1227
        Protein_position: ?-409
        Intron_number: 2-9/12
        Exon_number: 3-10/13
      T06H11.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-1467
        CDS_position: ?-1467
        Protein_position: ?-489
        Intron_number: 1-8/11
        Exon_number: 1-9/12
      T06H11.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T06H11.1c.1:c.149-1318_1278del
        cDNA_position: ?-1368
        CDS_position: ?-1278
        Protein_position: ?-426
        Intron_number: 2-10/13
        Exon_number: 3-11/14
  Genetics: Interpolated_map_position: X 1.7477
  Reference: WBPaper00028462
  Method: Deletion_allele