WormBase Tree Display for Variation: WBVar00144593
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WBVar00144593 | Evidence | Paper_evidence | WBPaper00001677 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | e2144 | |||||||
Other_name | F02A9.6.1:c.2785C>T | ||||||||
CE00237:p.Leu929Phe | |||||||||
HGVSg | CHROMOSOME_III:g.9098178C>T | ||||||||
Sequence_details | SMap | S_parent | Sequence | F02A9 | |||||
Flanking_sequences | tcaaagtatagacgacgagttctgcactgg | ttgctgccaatgtcagaggaaaaccggaag | |||||||
Mapping_target | F02A9 | ||||||||
Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00001677 | ||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00004881 | ||||||||
WBStrain00007730 | |||||||||
Laboratory | CB | ||||||||
CF | |||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00001609 | |||||||
Transcript | F02A9.6.1 (12) | ||||||||
Interactor | WBInteraction000521908 | ||||||||
WBInteraction000521912 | |||||||||
WBInteraction000521921 | |||||||||
WBInteraction000521924 | |||||||||
WBInteraction000557985 | |||||||||
WBInteraction000557987 | |||||||||
Isolation | Mutagen | EMS | |||||||
Genetics | Interpolated_map_position | III | 0.163947 | ||||||
Mapping_data | In_multi_point | 2462 | |||||||
Description | Phenotype | WBPhenotype:0000050 | Paper_evidence | WBPaper00001008 | |||||
WBPaper00040544 | |||||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPerson712 | |||||||||
Remark | The end of temperature sensitive period for the Emb phenotype is near the 28 cell stage | Paper_evidence | WBPaper00001008 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
temperature-sensitive mutation that causes embryonic lethality at its restrictive temperature | Paper_evidence | WBPaper00040544 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Penetrance | Complete | At 25C, 100 percent of mutants are Emb | Paper_evidence | WBPaper00001008 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00001008 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000003 | PATO:0000460 | Paper_evidence | WBPaper00001008 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00001008 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Paper_evidence | WBPaper00040544 | ||||||||
Curator_confirmed | WBPerson712 | ||||||||
Maternal | Strictly_maternal | Paper_evidence | WBPaper00001008 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Temperature | 15C , 25C | Paper_evidence | WBPaper00001008 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000052 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Maternal | With_maternal_effect | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000216 | Paper_evidence | WBPaper00003363 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | pes-1::lacZ expression is eliminated completely. | Paper_evidence | WBPaper00003363 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000684 | Paper_evidence | WBPaper00001008 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | At 25C, gonads of glp-1 mutants contain only 5-15 cells that resemble sperm and no other germ cells. | Paper_evidence | WBPaper00001008 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00001008 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00001008 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00001008 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Temperature | 15C , 25C | Paper_evidence | WBPaper00001008 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000688 | Paper_evidence | WBPaper00001008 | |||||||
WBPaper00040544 | |||||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPerson712 | |||||||||
Remark | Animals become sterile adults when shifted to 25C as L2 larvae | Paper_evidence | WBPaper00001008 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Penetrance | Complete | At 25C, 100 percent of mutants are sterile | Paper_evidence | WBPaper00001008 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00001008 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00001008 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00001008 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Paper_evidence | WBPaper00040544 | ||||||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Temperature | 15C , 25C | Paper_evidence | WBPaper00001008 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000812 | Paper_evidence | WBPaper00031962 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Animals are devoid of germ cells. | Paper_evidence | WBPaper00031962 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031962 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00031962 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Temperature | 25 | Paper_evidence | WBPaper00031962 | |||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001759 | Paper_evidence | WBPaper00031962 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | 21UR-1 was absent from animals at the restrictive temperature, which are devoid of germ cells. | Paper_evidence | WBPaper00031962 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031962 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | GO_term | GO:0034585 | PATO:0000460 | Paper_evidence | WBPaper00031962 | ||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00031962 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Temperature | 25 | Paper_evidence | WBPaper00031962 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Reference (11) | |||||||||
Method | Substitution_allele |