WormBase Tree Display for Variation: WBVar00144578
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WBVar00144578 | Name | Public_name | e2117 | |||||
---|---|---|---|---|---|---|---|---|
Sequence_details | SeqStatus | Pending_curation | ||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004541 | |||||||
Laboratory | CB | |||||||
Status | Live | |||||||
Affects (2) | ||||||||
Description | Phenotype | WBPhenotype:0000019 | Paper_evidence | WBPaper00003348 | ||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Mean pumping rate is 160 pumps/min compared to 275 pumps/min. | Paper_evidence | WBPaper00003348 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000057 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | early larval lethal at 25C | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Temperature_sensitive | Heat_sensitive | 25 | Person_evidence | WBPerson261 | ||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000583 | Paper_evidence | WBPaper00005747 | ||||||
Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | |||||||
WBPerson2987 | ||||||||
Remark | extreme dumpy at 25C | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Authors report "extreme dpy", temperature sensitive (Table 1) | Paper_evidence | WBPaper00005747 | ||||||
Curator_confirmed | WBPerson2987 | |||||||
Temperature_sensitive | Heat_sensitive | 25 | Person_evidence | WBPerson261 | ||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | ||||
Curator_confirmed | WBPerson2987 | |||||||
WBPhenotype:0000749 | Paper_evidence | WBPaper00000927 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Embryos retract after elongation. | Paper_evidence | WBPaper00000927 | |||||
Curator_confirmed | WBPerson712 | |||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00000927 | ||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Temperature | 15C, 25C | Paper_evidence | WBPaper00000927 | ||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000843 | Paper_evidence | WBPaper00003348 | ||||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000948 | Paper_evidence | WBPaper00000927 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | The striated layer of the cuticle is missing in retracted embryos. | Paper_evidence | WBPaper00000927 | |||||
Curator_confirmed | WBPerson712 | |||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00000927 | ||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Temperature | 15C, 25C | Paper_evidence | WBPaper00000927 | ||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000961 | Paper_evidence | WBPaper00005747 | ||||||
Curator_confirmed | WBPerson2987 | |||||||
Remark | Table 1 | Paper_evidence | WBPaper00005747 | |||||
Curator_confirmed | WBPerson2987 | |||||||
Phenotype_assay | Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | ||||
Curator_confirmed | WBPerson2987 | |||||||
WBPhenotype:0001412 | Paper_evidence | WBPaper00005747 | ||||||
Curator_confirmed | WBPerson2987 | |||||||
Remark | Authors report "abnormal branched ala" (Table 1) | Paper_evidence | WBPaper00005747 | |||||
Curator_confirmed | WBPerson2987 | |||||||
Phenotype_assay | Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | ||||
Curator_confirmed | WBPerson2987 | |||||||
WBPhenotype:0001517 | Paper_evidence | WBPaper00005747 | ||||||
Curator_confirmed | WBPerson2987 | |||||||
Remark | Authors report "severe disruption" (Table 1) | Paper_evidence | WBPaper00005747 | |||||
Curator_confirmed | WBPerson2987 | |||||||
Phenotype_assay | Genotype | kaIs12 [col-19::gfp] | Paper_evidence | WBPaper00005747 | ||||
Curator_confirmed | WBPerson2987 | |||||||
Phenotype_not_observed | WBPhenotype:0001732 | Paper_evidence | WBPaper00032033 | |||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Animals exhibited the same pH survival profile as the wild-type strain over a range of pH 3 to pH 10. | Paper_evidence | WBPaper00032033 | |||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Treatment | Mixed or synchronised populations of nematodes were exposed to 500ul M9 buffer (100 mM phosphate, 85 mM NaCl, 1 mM MgSO4 buffered at the appropriate pH by varying KH2PO4 and Na2HPO4 concentrations accordingly) at varying pHs in a 24-well plate format for 4 h (200 nematodes/well). Nematodes were scored as viable by the presence of touch response and pharyngeal pumping. | Paper_evidence | WBPaper00032033 | ||||
Curator_confirmed | WBPerson712 | |||||||
Reference | WBPaper00005704 | |||||||
WBPaper00005747 | ||||||||
WBPaper00032033 | ||||||||
WBPaper00003348 | ||||||||
WBPaper00000927 | ||||||||
WBPaper00013885 | ||||||||
Method | Allele |