WormBase Tree Display for Variation: WBVar00144007
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| WBVar00144007 | Evidence | Paper_evidence | WBPaper00003566 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | e1439 | |||||||
| Other_name | C09H6.2b.1:c.673C>A | ||||||||
| C09H6.2a.1:c.673C>A | |||||||||
| C09H6.2c.1:c.520C>A | |||||||||
| CE27060:p.Gly225Arg | |||||||||
| CE15610:p.Gly225Arg | |||||||||
| CE42752:p.Gly174Arg | |||||||||
| HGVSg | CHROMOSOME_I:g.8116726G>T | ||||||||
| Sequence_details | SMap | S_parent | Sequence | C09H6 | |||||
| Flanking_sequences | aagtgaagaaaagcggaaattatccggtgat | gaacggattcactcattcgaaaacaaatgag | |||||||
| Mapping_target | C09H6 | ||||||||
| Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00003566 | ||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00004333 | ||||||||
| WBStrain00026966 | |||||||||
| WBStrain00030927 | |||||||||
| WBStrain00033502 | |||||||||
| Laboratory | CB | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00002999 | |||||||
| Transcript | C09H6.2c.1 (11) | ||||||||
| C09H6.2b.1 (11) | |||||||||
| C09H6.2a.1 (11) | |||||||||
| Interactor | WBInteraction000502994 | ||||||||
| WBInteraction000517466 | |||||||||
| Genetics | Interpolated_map_position | I | 2.55923 | ||||||
| Mapping_data | In_multi_point (25) | ||||||||
| In_pos_neg_data | 740 | ||||||||
| 747 | |||||||||
| 749 | |||||||||
| 758 | |||||||||
| Description | Phenotype | WBPhenotype:0000698 | Paper_evidence | WBPaper00000762 | |||||
| WBPaper00002375 | |||||||||
| Person_evidence | WBPerson261 | ||||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPerson712 | |||||||||
| Remark | 24 percent of Vul hermaphrodites have 1 or more ventral protrusions. | Paper_evidence | WBPaper00000762 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| On average less than one VPC adopts a vulval fate. | Paper_evidence | WBPaper00002375 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Adult hermaphrodite vulvaless (penetrance 95%). Similar phenotype in e1439/Df. | Person_evidence | WBPerson261 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Penetrance | High | Paper_evidence | WBPaper00000762 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| 95% | Person_evidence | WBPerson261 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Range | 95 | 95 | Paper_evidence | WBPaper00000762 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Recessive | Paper_evidence | WBPaper00000762 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Variation_effect | Null | Paper_evidence | WBPaper00000762 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00000762 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Phenotype_assay | Temperature | 20 | Paper_evidence | WBPaper00000762 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Phenotype_not_observed | WBPhenotype:0000648 | Person_evidence | WBPerson261 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | Adult male wildtype. | Person_evidence | WBPerson261 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0001426 | Paper_evidence | WBPaper00004883 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Genotype | arIs37 | Paper_evidence | WBPaper00004883 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| Reference | WBPaper00013806 | ||||||||
| WBPaper00004883 | |||||||||
| WBPaper00014218 | |||||||||
| WBPaper00000762 | |||||||||
| WBPaper00002375 | |||||||||
| WBPaper00015978 | |||||||||
| Method | Substitution_allele |
