WormBase Tree Display for Variation: WBVar00143928

WBVar00143928 Evidence: Paper_evidence: WBPaper00001793
  Name: Public_name: e1338
    Other_name: CE52302:p.Trp52Ter
      CE42646:p.Trp26Ter
      F01D4.6c.1:c.76_77insA
      F01D4.6a.1:c.205_206insA
      F01D4.6d.1:c.154_155insA
      CE27422:p.Trp69Ter
    HGVSg: CHROMOSOME_IV:g.10461025_10461026insT
  Sequence_details: SMap: S_parent: Sequence: F01D4
    Flanking_sequences: gtgagtctcctctggccgaaaagtgttttt ggaaaaatgggagaatttattgtagtcaac
    Mapping_target: F01D4
    Type_of_mutation: Insertion: A
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004302
      WBStrain00006370
      WBStrain00027146
      WBStrain00052610
    Laboratory: CB
    Status: Live
  Affects: Gene: WBGene00003167
    Transcript: F01D4.6d.1 VEP_consequence: stop_gained,frameshift_variant
        VEP_impact: HIGH
        HGVSc: F01D4.6d.1:c.154_155insA
        HGVSp: CE52302:p.Trp52Ter
        cDNA_position: 251-252
        CDS_position: 154-155
        Protein_position: 52
        Exon_number: 3/9
        Codon_change: tgg/tAgg
        Amino_acid_change: W/*
      F01D4.6c.1 VEP_consequence: stop_gained,frameshift_variant
        VEP_impact: HIGH
        HGVSc: F01D4.6c.1:c.76_77insA
        HGVSp: CE42646:p.Trp26Ter
        cDNA_position: 76-77
        CDS_position: 76-77
        Protein_position: 26
        Exon_number: 1/6
        Codon_change: tgg/tAgg
        Amino_acid_change: W/*
      F01D4.6a.1 VEP_consequence: stop_gained,frameshift_variant
        VEP_impact: HIGH
        HGVSc: F01D4.6a.1:c.205_206insA
        HGVSp: CE27422:p.Trp69Ter
        cDNA_position: 306-307
        CDS_position: 205-206
        Protein_position: 69
        Exon_number: 4/10
        Codon_change: tgg/tAgg
        Amino_acid_change: W/*
    Interactor: WBInteraction000504765
      WBInteraction000504803
      WBInteraction000520236
      WBInteraction000520470
      WBInteraction000520812
  Genetics: Interpolated_map_position: IV 4.59802
    Mapping_data: In_2_point: 112
      In_multi_point: 287
        539
        909
        910
        1514
        1518
        1822
        2046
        2090
        2287
      In_pos_neg_data: 1650
        1651
        1652
        1653
        1654
        1655
        3869
  Description: Phenotype (12)
    Phenotype_not_observed: WBPhenotype:0000649 Paper_evidence: WBPaper00003680
        Curator_confirmed: WBPerson712
        Remark: males are not defective in response or vulva location Paper_evidence: WBPaper00003680
            Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: him-8(e1489) Paper_evidence: WBPaper00003680
              Curator_confirmed: WBPerson712
      WBPhenotype:0004004 Paper_evidence: WBPaper00003680
        Curator_confirmed: WBPerson712
        Remark: males are not defective in response or vulva location Paper_evidence: WBPaper00003680
            Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: him-8(e1489) Paper_evidence: WBPaper00003680
              Curator_confirmed: WBPerson712
  Reference (15)
  Remark
  Method: Insertion_allele