Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00143847

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00143847NamePublic_namee1228
Other_nameCE30258:p.Trp1120Ter
C48B6.6b.1:c.3366G>A
C48B6.6a.1:c.3360G>A
CE53740:p.Trp1122Ter
HGVSgCHROMOSOME_I:g.6907231C>T
Sequence_detailsSMapS_parentSequenceC48B6
Flanking_sequencesAAATCTTGTCAATAAAATGACTGGTGTCTCACAATGAAGAATAAACTCACTGATACGGAAATATTCGATAGAAATGAAGA
Mapping_targetC48B6
Type_of_mutationSubstitutionga
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004449
WBStrain00004569
WBStrain00007440
WBStrain00007451
WBStrain00008044
LaboratoryCB
StatusLive
AffectsGeneWBGene00004879
TranscriptC48B6.6b.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScC48B6.6b.1:c.3366G>A
HGVSpCE53740:p.Trp1122Ter
cDNA_position3366
CDS_position3366
Protein_position1122
Exon_number22/42
Codon_changetgG/tgA
Amino_acid_changeW/*
C48B6.6a.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScC48B6.6a.1:c.3360G>A
HGVSpCE30258:p.Trp1120Ter
cDNA_position3388
CDS_position3360
Protein_position1120
Exon_number23/44
Codon_changetgG/tgA
Amino_acid_changeW/*
InteractorWBInteraction000519151
WBInteraction000519160
GeneticsInterpolated_map_positionI1.48154
Mapping_dataIn_2_point328
In_multi_point204
2089
DescriptionPhenotype (4)
Phenotype_not_observedWBPhenotype:0001828Paper_evidenceWBPaper00004325
Curator_confirmedWBPerson2021
Remarksmg-1 homozygotes behaved like WT worms and did not recover from RNAi at allPaper_evidenceWBPaper00004325
Curator_confirmedWBPerson2021
Phenotype_assayTreatmentRNAi injectionPaper_evidenceWBPaper00004325
Curator_confirmedWBPerson2021
Reference (12)
Remark
MethodSubstitution_allele