WormBase Tree Display for Variation: WBVar00143832

WBVar00143832 Evidence: Paper_evidence: WBPaper00001553
  Name: Public_name: e1209
    Other_name: C15F1.3a.1:c.4191G>A
      CE23546:p.Trp1397Ter
      CE43762:p.Trp309Ter
      C15F1.3c.1:c.927G>A
    HGVSg: CHROMOSOME_II:g.6955856C>T
  Sequence_details: SMap: S_parent: Sequence: C15F1
    Flanking_sequences: aatggttgaatattgcgaagatatttactg acacaccgaactggacagctacctccagga
    Mapping_target: C15F1
    Type_of_mutation: Substitution: g a Paper_evidence: WBPaper00001553
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004430
      WBStrain00004556
    Laboratory: CB
    Status: Live
  Affects: Gene: WBGene00006605
    Transcript: C15F1.3a.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: C15F1.3a.1:c.4191G>A
        HGVSp: CE23546:p.Trp1397Ter
        cDNA_position: 4191
        CDS_position: 4191
        Protein_position: 1397
        Exon_number: 23/24
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
      C15F1.3c.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: C15F1.3c.1:c.927G>A
        HGVSp: CE43762:p.Trp309Ter
        cDNA_position: 927
        CDS_position: 927
        Protein_position: 309
        Exon_number: 3/3
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
    Interactor: WBInteraction000518890
      WBInteraction000519054
      WBInteraction000519055
      WBInteraction000519074
      WBInteraction000519082
      WBInteraction000519085
      WBInteraction000519160
  Genetics: Interpolated_map_position: II 0.150425
  Description: Phenotype: WBPhenotype:0000038 Paper_evidence: WBPaper00000178
        Curator_confirmed: WBPerson2021
        Recessive: Paper_evidence: WBPaper00000178
          Curator_confirmed: WBPerson2021
      WBPhenotype:0000073 Paper_evidence: WBPaper00000178
        Curator_confirmed: WBPerson2021
        Remark: Pseudomales have vestigial bursa structures Paper_evidence: WBPaper00000178
            Curator_confirmed: WBPerson2021
        Recessive: Paper_evidence: WBPaper00000178
          Curator_confirmed: WBPerson2021
      WBPhenotype:0000188 Paper_evidence: WBPaper00000178
        Curator_confirmed: WBPerson2021
        Remark: The gonads of XX pseudomales have two reflexed arms. Paper_evidence: WBPaper00000178
            Curator_confirmed: WBPerson2021
        Recessive: Paper_evidence: WBPaper00000178
          Curator_confirmed: WBPerson2021
      WBPhenotype:0000647 Paper_evidence: WBPaper00000178
        Curator_confirmed: WBPerson2021
        Remark: XX pseudomales do not mate Paper_evidence: WBPaper00000178
            Curator_confirmed: WBPerson2021
        Recessive: Paper_evidence: WBPaper00000178
          Curator_confirmed: WBPerson2021
      WBPhenotype:0001025 Paper_evidence: WBPaper00000178
        Curator_confirmed: WBPerson2021
        Remark: Pseudomales have a variable number of catecholamine cells and extra ventral nerve cord processes and extra cephalic sensory structures. Pseudomales also have a set of diagonal muscles (that are normally present only in adult males) and vestigial vulval structures. Paper_evidence: WBPaper00000178
            Curator_confirmed: WBPerson2021
        Recessive: Paper_evidence: WBPaper00000178
          Curator_confirmed: WBPerson2021
      WBPhenotype:0001277 Paper_evidence: WBPaper00000178
        Curator_confirmed: WBPerson2021
        Remark: XX animals are phenotypically male Paper_evidence: WBPaper00000178
            Curator_confirmed: WBPerson2021
        Recessive: Paper_evidence: WBPaper00000178
          Curator_confirmed: WBPerson2021
  Reference: WBPaper00000178
    WBPaper00013705
    WBPaper00016504
    WBPaper00013706
    WBPaper00014435
    WBPaper00013850
  Method: Substitution_allele