WormBase Tree Display for Variation: WBVar00143543
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| WBVar00143543 | Evidence | Paper_evidence | WBPaper00003865 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | e856 | |||||
| Other_name | CE25060:p.Glu195Lys | ||||||
| M03A1.1.1:c.583G>A | |||||||
| HGVSg | CHROMOSOME_II:g.4579314G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | M03A1 | |||
| Flanking_sequences | gacacgaaaacgattagaattgcattcgaa | agcaaggaatttgtctttcacttttaaatg | |||||
| Mapping_target | M03A1 | ||||||
| Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00003865 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00005347 | ||||||
| WBStrain00005368 | |||||||
| Laboratory | CB | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006868 | |||||
| WBGene00305535 | |||||||
| Transcript | M03A1.1.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | ||||||
| SIFT | 0.06 | tolerated | |||||
| PolyPhen | 0.944 | possibly_damaging | |||||
| HGVSc | M03A1.1.1:c.583G>A | ||||||
| HGVSp | CE25060:p.Glu195Lys | ||||||
| cDNA_position | 672 | ||||||
| CDS_position | 583 | ||||||
| Protein_position | 195 | ||||||
| Exon_number | 5/12 | ||||||
| Codon_change | Gag/Aag | ||||||
| Amino_acid_change | E/K | ||||||
| M03A1.13 | |||||||
| Genetics | Gene_class | vab | |||||
| Interpolated_map_position | II | -3.86082 | |||||
| Description | Phenotype | WBPhenotype:0002045 | Paper_evidence | WBPaper00040629 | |||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | Mutants show decreased germ-cell corpse numbers. | Paper_evidence | WBPaper00040629 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Reference | WBPaper00040629 | ||||||
| WBPaper00003865 | |||||||
| Method | Substitution_allele |
