WormBase Tree Display for Variation: WBVar00143286
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| WBVar00143286 | Evidence | Person_evidence | WBPerson298 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | e540 | |||||||
| Other_name (16) | |||||||||
| HGVSg | CHROMOSOME_V:g.6912855C>T | ||||||||
| Sequence_details | SMap | S_parent | Sequence | K11C4 | |||||
| Flanking_sequences | tgagcatctctccttgtagaatgatttttc | tgaaaaaaaaaagaaaattgttgttaacat | |||||||
| Mapping_target | K11C4 | ||||||||
| Type_of_mutation | Substitution | C | T | ||||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00000489 | ||||||||
| WBStrain00004179 | |||||||||
| WBStrain00008434 | |||||||||
| Laboratory | CB | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00006801 | |||||||
| Transcript (16) | |||||||||
| Interactor | WBInteraction000501717 | ||||||||
| WBInteraction000502865 | |||||||||
| WBInteraction000504811 | |||||||||
| WBInteraction000520126 | |||||||||
| WBInteraction000524783 | |||||||||
| WBInteraction000556209 | |||||||||
| WBInteraction000556212 | |||||||||
| Genetics | Interpolated_map_position | V | 0.473391 | ||||||
| Mapping_data | In_2_point | 310 | |||||||
| 3136 | |||||||||
| In_multi_point (11) | |||||||||
| In_pos_neg_data | 847 | ||||||||
| 1743 | |||||||||
| 1749 | |||||||||
| 1775 | |||||||||
| 3073 | |||||||||
| 3082 | |||||||||
| 3432 | |||||||||
| Description | Phenotype | WBPhenotype:0000002 | Person_evidence | WBPerson261 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | weak kinker | Person_evidence | WBPerson261 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Ease_of_scoring | ES3_Easy_to_score | Person_evidence | WBPerson261 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0000164 | Person_evidence | WBPerson261 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0000561 | Paper_evidence | WBPaper00000484 | |||||||
| Person_evidence | WBPerson261 | ||||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPerson712 | |||||||||
| Remark | head region but not body resistant to 1 mM levamisole | Person_evidence | WBPerson261 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Affected_by | Molecule | WBMol:00004019 | Paper_evidence | WBPaper00000484 | |||||
| Person_evidence | WBPerson261 | ||||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPerson712 | |||||||||
| EQ_annotations | Anatomy_term | WBbt:0005739 | PATO:0000460 | Paper_evidence | WBPaper00000484 | ||||
| Person_evidence | WBPerson261 | ||||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPerson712 | |||||||||
| Phenotype_assay | Treatment | 1mM levamisole | Paper_evidence | WBPaper00000484 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0000563 | Person_evidence | WBPerson261 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | slight shrinker | Person_evidence | WBPerson261 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0000643 | Paper_evidence | WBPaper00000031 | |||||||
| WBPaper00000484 | |||||||||
| WBPaper00001474 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson2021 | |||||||||
| WBPerson712 | |||||||||
| WBPhenotype:0000646 | Person_evidence | WBPerson261 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0001599 | Paper_evidence | WBPaper00000484 | |||||||
| Person_evidence | WBPerson261 | ||||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPerson712 | |||||||||
| Remark | Head is resistant to ouabain treatment | Paper_evidence | WBPaper00000484 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| head region but not body resistant to ouabain | Person_evidence | WBPerson261 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Affected_by | Molecule | WBMol:00001924 | Person_evidence | WBPerson261 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0005739 | PATO:0000460 | Paper_evidence | WBPaper00000484 | ||||
| Person_evidence | WBPerson261 | ||||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPerson712 | |||||||||
| Phenotype_assay | Treatment | 1mM ouabain | Paper_evidence | WBPaper00000484 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Phenotype_not_observed | WBPhenotype:0001645 | Paper_evidence | WBPaper00040284 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | Table S2 | Paper_evidence | WBPaper00040284 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Reference | WBPaper00014466 | ||||||||
| WBPaper00040284 | |||||||||
| WBPaper00001474 | |||||||||
| WBPaper00000031 | |||||||||
| WBPaper00015529 | |||||||||
| WBPaper00017842 | |||||||||
| WBPaper00015030 | |||||||||
| WBPaper00022183 | |||||||||
| WBPaper00002749 | |||||||||
| WBPaper00011910 | |||||||||
| WBPaper00015497 | |||||||||
| WBPaper00022677 | |||||||||
| WBPaper00015367 | |||||||||
| WBPaper00014634 | |||||||||
| WBPaper00017307 | |||||||||
| WBPaper00006125 | |||||||||
| WBPaper00000484 | |||||||||
| WBPaper00015780 | |||||||||
| WBPaper00022940 | |||||||||
| WBPaper00023194 | |||||||||
| Remark | We sequenced e540 for Mueller, et al (eLife, in revision). e540 is a splice acceptor mutation. alt_det = V: 6912855C>T mut_det = G>A in splice acceptor upstream of exon 23 in unc-68 | Person_evidence | WBPerson298 | ||||||
| Curator_confirmed | WBPerson51134 | ||||||||
| Variation information submitted by WBPerson298 on 2022-10-25_12:05:38 via the Allele submission form. | Curator_confirmed | WBPerson51134 | |||||||
| Method | Substitution_allele |
