WormBase Tree Display for Variation: WBVar00143187
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WBVar00143187 | Evidence | Paper_evidence | WBPaper00031105 | |||||
---|---|---|---|---|---|---|---|---|
Name | Public_name | e408 | ||||||
Other_name (23) | ||||||||
HGVSg | CHROMOSOME_IV:g.10338170G>A | |||||||
Sequence_details | SMap | S_parent | Sequence | K11E8 | ||||
Flanking_sequences | acggatttgctggaactccaggatacttgt | gccagaagttctcaagaaggatccatactc | ||||||
Mapping_target | K11E8 | |||||||
Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00031105 | |||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004165 | |||||||
WBStrain00022482 | ||||||||
WBStrain00030762 | ||||||||
WBStrain00056767 | ||||||||
Laboratory | CB | |||||||
EN | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00006779 | ||||||
Transcript (14) | ||||||||
Interactor | WBInteraction000501679 | |||||||
Genetics | Interpolated_map_position | IV | 4.5762 | |||||
Mapping_data | In_multi_point | 764 | ||||||
In_pos_neg_data | 956 | |||||||
2739 | ||||||||
Description | Phenotype | WBPhenotype:0000004 | Person_evidence | WBPerson261 | ||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000153 | Paper_evidence | WBPaper00002305 | ||||||
Curator_confirmed | WBPerson557 | |||||||
WBPhenotype:0000164 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | thin | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000205 | Paper_evidence | WBPaper00002305 | ||||||
Curator_confirmed | WBPerson557 | |||||||
WBPhenotype:0000315 | Paper_evidence | WBPaper00046308 | ||||||
Curator_confirmed | WBPerson10425 | |||||||
WBPhenotype:0000422 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | slightly rippling movement | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000563 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | tends to shrink and relax when prodded | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000583 | Paper_evidence | WBPaper00002305 | ||||||
Curator_confirmed | WBPerson557 | |||||||
WBPhenotype:0000616 | Paper_evidence | WBPaper00042396 | ||||||
Curator_confirmed | WBPerson1687 | |||||||
Remark | GABAergic neuromuscular junctions (NMJs) are enlarged | Paper_evidence | WBPaper00042396 | |||||
Curator_confirmed | WBPerson1687 | |||||||
Recessive | Paper_evidence | WBPaper00042396 | ||||||
Curator_confirmed | WBPerson1687 | |||||||
Variation_effect | Loss_of_function_undetermined_extent | Paper_evidence | WBPaper00042396 | |||||
Curator_confirmed | WBPerson1687 | |||||||
EQ_annotations (2) | ||||||||
WBPhenotype:0000640 | Paper_evidence | WBPaper00002305 | ||||||
Curator_confirmed | WBPerson557 | |||||||
WBPhenotype:0000641 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | lazy | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000643 | Paper_evidence | WBPaper00000031 | ||||||
WBPaper00002305 | ||||||||
Curator_confirmed | WBPerson48 | |||||||
WBPerson557 | ||||||||
WBPhenotype:0000646 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | slow, easy to score (ES3) in adult. | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Ease_of_scoring | ES3_Easy_to_score | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0001005 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | poor backing thin | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0001213 | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | almost paralysed, larvae move better | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_not_observed | WBPhenotype:0001645 | Paper_evidence | WBPaper00040284 | |||||
Curator_confirmed | WBPerson2987 | |||||||
Remark | Table S2 | Paper_evidence | WBPaper00040284 | |||||
Curator_confirmed | WBPerson2987 | |||||||
WBPhenotype:0001660 | Paper_evidence | WBPaper00006052 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | No disruption of ASE asymmetry (as seen with lim-6 reporters) | Paper_evidence | WBPaper00006052 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Hypomorph_reduction_of_function | Paper_evidence | WBPaper00006052 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Phenotype_assay | Genotype | otIs114, otIs6 | Paper_evidence | WBPaper00006052 | ||||
Curator_confirmed | WBPerson2021 | |||||||
Reference (12) | ||||||||
Method | Substitution_allele |