WormBase Tree Display for Variation: WBVar00143053
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| WBVar00143053 | Evidence | Paper_evidence | WBPaper00003560 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | e234 | |||||
| Other_name | F27D9.1a.1:c.421C>T | ||||||
| CE24927:p.Gln141Ter | |||||||
| HGVSg | CHROMOSOME_X:g.7683517C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | F27D9 | |||
| Flanking_sequences | attaacatagctttcactccatacgaaagc | aggtgagatttgttccaaataaatcaaaaat | |||||
| Mapping_target | F27D9 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00003560 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00004132 | ||||||
| Laboratory | CB | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006757 | |||||
| Transcript | F27D9.1a.1 | VEP_consequence | stop_gained,splice_region_variant | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | F27D9.1a.1:c.421C>T | ||||||
| HGVSp | CE24927:p.Gln141Ter | ||||||
| cDNA_position | 457 | ||||||
| CDS_position | 421 | ||||||
| Protein_position | 141 | ||||||
| Exon_number | 5/11 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| Interactor | WBInteraction000503689 | ||||||
| WBInteraction000504812 | |||||||
| Genetics | Interpolated_map_position | X | -1.35792 | ||||
| Reference | WBPaper00017045 | ||||||
| WBPaper00018583 | |||||||
| WBPaper00019382 | |||||||
| Method | Substitution_allele |
