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WormBase Tree Display for Variation: WBVar00143022

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Name Class

WBVar00143022EvidencePaper_evidenceWBPaper00027121
NamePublic_namee188
Other_namee188ts
H27M09.4.1:c.415G>C
CE25036:p.Gly139Arg
HGVSgCHROMOSOME_I:g.6844486G>C
Sequence_detailsSMapS_parentSequenceH27M09
Flanking_sequencesacatgccaacaaggaaaggctggaccaccagaccaccaggagatgatggaaaggacggaa
Mapping_targetH27M09
Type_of_mutationSubstitutiongcPaper_evidenceWBPaper00027121
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00000460
WBStrain00000461
WBStrain00000462
WBStrain00000463
WBStrain00000465
WBStrain00000466
WBStrain00000467
WBStrain00000468
WBStrain00000469
WBStrain00000470
WBStrain00000472
WBStrain00000473
WBStrain00000474
WBStrain00000477
WBStrain00000478
WBStrain00000481
WBStrain00000482
WBStrain00000483
WBStrain00000495
WBStrain00003973
WBStrain00004122
WBStrain00006268
WBStrain00022567
WBStrain00023600
WBStrain00023827
WBStrain00023828
WBStrain00023829
WBStrain00023830
WBStrain00023831
WBStrain00023832
WBStrain00023833
WBStrain00023834
WBStrain00023885
WBStrain00023900
WBStrain00023902
WBStrain00023924
WBStrain00023925
WBStrain00023926
WBStrain00023927
WBStrain00023928
WBStrain00023929
WBStrain00023930
WBStrain00023931
WBStrain00023932
WBStrain00023934
WBStrain00023936
WBStrain00023937
WBStrain00023938
WBStrain00023939
WBStrain00023940
WBStrain00023942
WBStrain00023943
WBStrain00023944
WBStrain00023945
WBStrain00023946
WBStrain00023949
WBStrain00027016
WBStrain00027019
WBStrain00027263
WBStrain00028640
WBStrain00028641
WBStrain00028642
LaboratoryCB
StatusLive
AffectsGeneWBGene00001075
TranscriptH27M09.4.1 (12)
InteractorWBInteraction000518462
GeneticsInterpolated_map_positionI1.37773
Mapping_dataIn_2_point5
241
242
5116
5118
6055
In_multi_point (66)
In_pos_neg_data (55)
DescriptionPhenotypeWBPhenotype:0000035Paper_evidenceWBPaper00000031
Curator_confirmedWBPerson48
WBPhenotype:0000062Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkts lethal (25C). Lethality enhanced by Smg. ES3 (all stages 20C).Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Temperature_sensitiveHeat_sensitive25Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000519Paper_evidenceWBPaper00033444
Curator_confirmedWBPerson2021
RemarkMutant strains tested showed altered fitness compared to wild type when exposed to different bacterial environments such as E. coli, M. luteus, and Pseudomonas sp.and B. megateriumPaper_evidenceWBPaper00033444
Curator_confirmedWBPerson2021
WBPhenotype:0000583Paper_evidenceWBPaper00000031
Person_evidenceWBPerson261
Curator_confirmedWBPerson48
WBPerson712
RemarkMedium dumpy adult, strong dumpy L1 (20C). Easy to score (ES3) at all stages (20C).Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Phenotype_assayTemperature20Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Ease_of_scoringES3_Easy_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
Phenotype_not_observedWBPhenotype:0000505Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
RemarkMales are not Ram.Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0006941PATO:0000460Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Life_stageWBls:0000056PATO:0000460Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Phenotype_assayTemperature20CPaper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Genotypehim-5(e1490)Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
WBPhenotype:0001426Paper_evidenceWBPaper00004883
Curator_confirmedWBPerson712
Phenotype_assayGenotypearIs37Paper_evidenceWBPaper00004883
Curator_confirmedWBPerson712
ReferenceWBPaper00001328
WBPaper00000031
WBPaper00004883
WBPaper00024024
WBPaper00014397
WBPaper00016102
WBPaper00025792
WBPaper00033444
WBPaper00061175
RemarkCreated by WBPerson51134 from the NN_VFP_triage_pipeline
Variation stub/paper connection generated from the May 2021 NN VFP dataset.
MethodSubstitution_allele