WormBase Tree Display for Variation: WBVar00142958
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WBVar00142958 | Evidence | Paper_evidence | WBPaper00003843 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | e96 | |||||||
Other_name | Y37E11AR.6b.1:c.478C>T | ||||||||
Y37E11AR.6a.1:c.793C>T | |||||||||
CE27606:p.Arg265Ter | |||||||||
CE48555:p.Arg160Ter | |||||||||
HGVSg | CHROMOSOME_IV:g.3761479G>A | ||||||||
Sequence_details | SMap | S_parent | Sequence | Y37E11AR | |||||
Flanking_sequences | gaatctctgtactcatcatctggacggctc | gatatgtgctcctactgccggctctcctgc | |||||||
Mapping_target | Y37E11AR | ||||||||
Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00003843 | ||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00004098 | ||||||||
WBStrain00005671 | |||||||||
Laboratory | CB | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00006869 | |||||||
Transcript | Y37E11AR.6a.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | ||||||||
HGVSc | Y37E11AR.6a.1:c.793C>T | ||||||||
HGVSp | CE27606:p.Arg265Ter | ||||||||
cDNA_position | 799 | ||||||||
CDS_position | 793 | ||||||||
Protein_position | 265 | ||||||||
Exon_number | 5/6 | ||||||||
Codon_change | Cga/Tga | ||||||||
Amino_acid_change | R/* | ||||||||
Y37E11AR.6b.1 | VEP_consequence | stop_gained | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | Y37E11AR.6b.1:c.478C>T | ||||||||
HGVSp | CE48555:p.Arg160Ter | ||||||||
cDNA_position | 478 | ||||||||
CDS_position | 478 | ||||||||
Protein_position | 160 | ||||||||
Exon_number | 3/3 | ||||||||
Codon_change | Cga/Tga | ||||||||
Amino_acid_change | R/* | ||||||||
Interactor | WBInteraction000519472 | ||||||||
Genetics (2) | |||||||||
Description | Phenotype (4) | ||||||||
Phenotype_not_observed | WBPhenotype:0000247 | Paper_evidence | WBPaper00000214 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000254 | Paper_evidence | WBPaper00000214 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000505 | Paper_evidence | WBPaper00001328 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Males are not Ram. | Paper_evidence | WBPaper00001328 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0006941 | PATO:0000460 | Paper_evidence | WBPaper00001328 | ||||
Curator_confirmed | WBPerson712 | ||||||||
Life_stage | WBls:0000056 | PATO:0000460 | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Temperature | 20C | Paper_evidence | WBPaper00001328 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Genotype | him-5(e1490) | Paper_evidence | WBPaper00001328 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Reference | WBPaper00040629 | ||||||||
WBPaper00031872 | |||||||||
WBPaper00001328 | |||||||||
WBPaper00000031 | |||||||||
WBPaper00000214 | |||||||||
Method | Substitution_allele |