WormBase Tree Display for Variation: WBVar00142950
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WBVar00142950 | Evidence | Paper_evidence | WBPaper00005417 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | e78 | |||||
Other_name | F41C6.1.2:c.1229G>A | ||||||
CE04538:p.Cys410Tyr | |||||||
F41C6.1.1:c.1229G>A | |||||||
HGVSg | CHROMOSOME_X:g.6894828G>A | ||||||
Sequence_details | SMap | S_parent | Sequence | F41C6 | |||
Flanking_sequences | tccatactaaattcaaaaccacttaagctt | tggatgtcatccagtcggatcacttggaaa | |||||
Mapping_target | F41C6 | ||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00005417 | ||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain (12) | |||||||
Laboratory | CB | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00006746 | |||||
Transcript | F41C6.1.1 (12) | ||||||
F41C6.1.2 | VEP_consequence | missense_variant | |||||
VEP_impact | MODERATE | ||||||
SIFT | 0 | deleterious | |||||
PolyPhen | 1 | probably_damaging | |||||
HGVSc | F41C6.1.2:c.1229G>A | ||||||
HGVSp | CE04538:p.Cys410Tyr | ||||||
cDNA_position | 1295 | ||||||
CDS_position | 1229 | ||||||
Protein_position | 410 | ||||||
Exon_number | 9/16 | ||||||
Codon_change | tGt/tAt | ||||||
Amino_acid_change | C/Y | ||||||
Interactor | WBInteraction000500108 | ||||||
WBInteraction000500177 | |||||||
WBInteraction000500190 | |||||||
WBInteraction000500384 | |||||||
WBInteraction000500890 | |||||||
WBInteraction000500928 | |||||||
WBInteraction000502341 | |||||||
WBInteraction000502343 | |||||||
WBInteraction000556211 | |||||||
Genetics | Interpolated_map_position | X | -2.07168 | ||||
Mapping_data | In_2_point | 150 | |||||
165 | |||||||
185 | |||||||
188 | |||||||
236 | |||||||
237 | |||||||
3385 | |||||||
In_multi_point (37) | |||||||
In_pos_neg_data (16) | |||||||
Description | Phenotype (14) | ||||||
Phenotype_not_observed (4) | |||||||
Reference (21) | |||||||
Method | Substitution_allele |