WormBase Tree Display for Variation: WBVar00130450
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| WBVar00130450 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00130450 | ||||
| Other_name | cbs65971 | |||||
| cb65971 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIV:g.4392868G>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4260b | ||
| Flanking_sequences | gaaatttcaaaaaatacaaaaatct | aaattttcgaaaatcggaatttcca | ||||
| Mapping_target | cb25.fpc4260b | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 160 158 124 110 57 54 39 36 32 27 26 25 23 19 18 17 16 15 11 10 8 8 7 | ||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 352 310 180 132 26 | ||||
| TGCA | CviRI, HpyCH4V | 579 302 119 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 208 156 116 103 94 66 57 56 49 26 24 21 16 8 | ||||
| GANTC | HinfI | 628 237 112 23 | ||||
| TCNGA | Hpy188I | 340 196 116 86 70 62 26 26 25 18 17 10 8 | ||||
| GAWTC | TfiI | 628 237 112 23 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 160 158 124 110 57 54 39 36 32 26 25 23 19 18 17 17 16 15 11 10 10 8 8 7 | |||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 352 302 180 132 26 8 | ||||
| TGCA | CviRI, HpyCH4V | 881 119 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 208 156 116 95 94 66 57 56 49 26 24 21 16 8 8 | ||||
| GANTC | HinfI | 566 237 112 62 23 | ||||
| TCNGA | Hpy188I | 340 196 116 86 70 62 42 26 26 18 10 8 | ||||
| GAWTC | TfiI | 566 237 112 62 23 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00000329 | ||||
| Transcript | CBG21774.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21774.1:c.526-180C>T | |||||
| Intron_number | 5/8 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
